Results 21 - 40 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21690 | 3' | -53.3 | NC_004812.1 | + | 38527 | 0.74 | 0.666805 |
Target: 5'- cCGGAGA-CGCGCGGCgGCcggGGUCGg -3' miRNA: 3'- aGCUUCUaGCGCGUCGaCGa--CUAGCg -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 18873 | 0.74 | 0.666805 |
Target: 5'- cCGggGGUCG-GCGGCccGCgGGUCGCc -3' miRNA: 3'- aGCuuCUAGCgCGUCGa-CGaCUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 29785 | 0.74 | 0.666805 |
Target: 5'- gCGAuGGUCGgGCAGCUGgUGGcaaacagacggcUCGCg -3' miRNA: 3'- aGCUuCUAGCgCGUCGACgACU------------AGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 58020 | 0.73 | 0.677158 |
Target: 5'- cUCGgcGAUgaugcCGCGCAGCUGC---UCGCa -3' miRNA: 3'- -AGCuuCUA-----GCGCGUCGACGacuAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 38799 | 0.73 | 0.687471 |
Target: 5'- cUCGAGGGUCGCccgcaggugucgGgGGCUGCgGcgCGCg -3' miRNA: 3'- -AGCUUCUAGCG------------CgUCGACGaCuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 7898 | 0.73 | 0.687471 |
Target: 5'- cUCGAGGGUCGCccgcaggugucgGgGGCUGCgGcgCGCg -3' miRNA: 3'- -AGCUUCUAGCG------------CgUCGACGaCuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 52246 | 0.73 | 0.697738 |
Target: 5'- -gGGAGGUgCGgGCGGCUgGUUGGUUGCg -3' miRNA: 3'- agCUUCUA-GCgCGUCGA-CGACUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 80892 | 0.73 | 0.707948 |
Target: 5'- aCGGAGccgcUgGCGCGGCUGCUG--CGCa -3' miRNA: 3'- aGCUUCu---AgCGCGUCGACGACuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 74856 | 0.73 | 0.712013 |
Target: 5'- gCGGAGAacaUCGaGCAGCUGCUccgcgagcugcacgcGAUCGUg -3' miRNA: 3'- aGCUUCU---AGCgCGUCGACGA---------------CUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 147429 | 0.73 | 0.717079 |
Target: 5'- uUCGAgcggcaGGGUCuguagguGCGCGGacgGCUGGUCGCa -3' miRNA: 3'- -AGCU------UCUAG-------CGCGUCga-CGACUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 102309 | 0.73 | 0.71809 |
Target: 5'- gCGAucaaGGAUcCG-GCGGCUGCUG-UCGCg -3' miRNA: 3'- aGCU----UCUA-GCgCGUCGACGACuAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 67554 | 0.72 | 0.728157 |
Target: 5'- gUCGGcgcagAGGUCGaucaGCAGCUcCUGGUCGUa -3' miRNA: 3'- -AGCU-----UCUAGCg---CGUCGAcGACUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 59285 | 0.72 | 0.738138 |
Target: 5'- cUCGAccAGGUUGCGCaucAGCUGCUccaccUCGCg -3' miRNA: 3'- -AGCU--UCUAGCGCG---UCGACGAcu---AGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 59966 | 0.72 | 0.757803 |
Target: 5'- aCGggG-UCGCGCGGCgccgGCUcGUgGCg -3' miRNA: 3'- aGCuuCuAGCGCGUCGa---CGAcUAgCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 128963 | 0.72 | 0.767468 |
Target: 5'- gCGggGGUCGgGCccGGCggGC-GGUCGCg -3' miRNA: 3'- aGCuuCUAGCgCG--UCGa-CGaCUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 45621 | 0.72 | 0.767468 |
Target: 5'- cUGgcGGUCGCGCGGCUGUUc--CGCc -3' miRNA: 3'- aGCuuCUAGCGCGUCGACGAcuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 3455 | 0.72 | 0.767468 |
Target: 5'- gCGggGGUCGgGCccGGCggGC-GGUCGCg -3' miRNA: 3'- aGCuuCUAGCgCG--UCGa-CGaCUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 80309 | 0.72 | 0.777008 |
Target: 5'- aCGgcGAcCGCGCcgcGCUGCUGGagGCg -3' miRNA: 3'- aGCuuCUaGCGCGu--CGACGACUagCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 91578 | 0.71 | 0.795676 |
Target: 5'- gUUGGAGAagGCGguGCUG--GGUCGCg -3' miRNA: 3'- -AGCUUCUagCGCguCGACgaCUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 110368 | 0.71 | 0.799339 |
Target: 5'- aUCGAGGAcacgaucuUCGCGCucuucugcgcccccgAGCUGCUGGaCGg -3' miRNA: 3'- -AGCUUCU--------AGCGCG---------------UCGACGACUaGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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