miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 3' -53.3 NC_004812.1 + 100289 0.69 0.871131
Target:  5'- cUCGGAGGcggCGCGCGcGCgcgcGCUGcgCGUg -3'
miRNA:   3'- -AGCUUCUa--GCGCGU-CGa---CGACuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 96169 0.69 0.871131
Target:  5'- uUCGAGGG-CG-GCGGCgaGgUGGUCGCg -3'
miRNA:   3'- -AGCUUCUaGCgCGUCGa-CgACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 105878 0.69 0.878495
Target:  5'- gUCGuGGG-CGCGCGGUgcGCUGGcgcUCGCg -3'
miRNA:   3'- -AGCuUCUaGCGCGUCGa-CGACU---AGCG- -5'
21690 3' -53.3 NC_004812.1 + 65532 0.69 0.885632
Target:  5'- cCGAGGccaagCgGCGCaAGCUGCUGGUCu- -3'
miRNA:   3'- aGCUUCua---G-CGCG-UCGACGACUAGcg -5'
21690 3' -53.3 NC_004812.1 + 154743 0.69 0.885632
Target:  5'- gCGggGGUCGCGgAGgaGCgggccgGGgcugCGCg -3'
miRNA:   3'- aGCuuCUAGCGCgUCgaCGa-----CUa---GCG- -5'
21690 3' -53.3 NC_004812.1 + 29235 0.69 0.885632
Target:  5'- gCGggGGUCGCGgAGgaGCgggccgGGgcugCGCg -3'
miRNA:   3'- aGCuuCUAGCGCgUCgaCGa-----CUa---GCG- -5'
21690 3' -53.3 NC_004812.1 + 50133 0.69 0.891174
Target:  5'- gCGggGcucaucgcgugCGCGCAGCUGgaGcgCGUg -3'
miRNA:   3'- aGCuuCua---------GCGCGUCGACgaCuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 82085 0.69 0.892537
Target:  5'- aUCGAGGG-CGCGUGGCccgGCUGGcCGg -3'
miRNA:   3'- -AGCUUCUaGCGCGUCGa--CGACUaGCg -5'
21690 3' -53.3 NC_004812.1 + 103333 0.69 0.892537
Target:  5'- gUCGAGu-UCGCGCGGCUGCaGuucaCGUa -3'
miRNA:   3'- -AGCUUcuAGCGCGUCGACGaCua--GCG- -5'
21690 3' -53.3 NC_004812.1 + 56796 0.69 0.892537
Target:  5'- cCGgcGccguUCGCGCGGCgcaGCUGGcggCGCg -3'
miRNA:   3'- aGCuuCu---AGCGCGUCGa--CGACUa--GCG- -5'
21690 3' -53.3 NC_004812.1 + 69334 0.69 0.899205
Target:  5'- cUCGuGGG-CGCGCAGCUGCUccaccaGCu -3'
miRNA:   3'- -AGCuUCUaGCGCGUCGACGAcuag--CG- -5'
21690 3' -53.3 NC_004812.1 + 145447 0.69 0.899205
Target:  5'- gCGAuGAcCGCGCGGa-GCUGcUCGCg -3'
miRNA:   3'- aGCUuCUaGCGCGUCgaCGACuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 30934 0.69 0.899205
Target:  5'- cUGAAGAUCGCGCGGCccgagGCcuccccgagGGUCa- -3'
miRNA:   3'- aGCUUCUAGCGCGUCGa----CGa--------CUAGcg -5'
21690 3' -53.3 NC_004812.1 + 140598 0.69 0.899205
Target:  5'- -gGAAGGccUgGCGgAGCUGCUGcuggCGCg -3'
miRNA:   3'- agCUUCU--AgCGCgUCGACGACua--GCG- -5'
21690 3' -53.3 NC_004812.1 + 147705 0.69 0.899205
Target:  5'- cCGggGGUCGUGUggcgcggggGGCUGUacgUGAUgaCGCg -3'
miRNA:   3'- aGCuuCUAGCGCG---------UCGACG---ACUA--GCG- -5'
21690 3' -53.3 NC_004812.1 + 138316 0.69 0.905001
Target:  5'- -gGAGGGUgGCGcCGGCgcggaggaggcccUGCgGAUCGCg -3'
miRNA:   3'- agCUUCUAgCGC-GUCG-------------ACGaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 95004 0.69 0.905633
Target:  5'- gUGGAGcucgcUCGCGCAGgUGCUGGg-GCu -3'
miRNA:   3'- aGCUUCu----AGCGCGUCgACGACUagCG- -5'
21690 3' -53.3 NC_004812.1 + 44257 0.69 0.905633
Target:  5'- gCGAGGGcCGa-UAGCcGCUGGUCGCg -3'
miRNA:   3'- aGCUUCUaGCgcGUCGaCGACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 29961 0.69 0.905633
Target:  5'- aCGggGcgCGCgaacaGCAGCUGCcGGagGCu -3'
miRNA:   3'- aGCuuCuaGCG-----CGUCGACGaCUagCG- -5'
21690 3' -53.3 NC_004812.1 + 152857 0.68 0.911818
Target:  5'- cCGgcGccgcCGCGCcGCUGCUGG-CGCg -3'
miRNA:   3'- aGCuuCua--GCGCGuCGACGACUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.