Results 81 - 100 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21690 | 3' | -53.3 | NC_004812.1 | + | 27349 | 0.68 | 0.911818 |
Target: 5'- cCGgcGccgcCGCGCcGCUGCUGG-CGCg -3' miRNA: 3'- aGCuuCua--GCGCGuCGACGACUaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 49912 | 0.68 | 0.917759 |
Target: 5'- -------aCGCGCAGCgacgGCUgGAUCGCc -3' miRNA: 3'- agcuucuaGCGCGUCGa---CGA-CUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 20098 | 0.68 | 0.923452 |
Target: 5'- cUCGGAGGagcgcgccgCGCGCAGCgGCg---CGCg -3' miRNA: 3'- -AGCUUCUa--------GCGCGUCGaCGacuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 29334 | 0.68 | 0.923452 |
Target: 5'- gUCGgcGcGggGCGCGGCUGCgaggGggCGCg -3' miRNA: 3'- -AGCuuC-UagCGCGUCGACGa---CuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 72059 | 0.68 | 0.923452 |
Target: 5'- gUCGggGG-CGCuggggGCGGCgGCUGuuUCGCc -3' miRNA: 3'- -AGCuuCUaGCG-----CGUCGaCGACu-AGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 154842 | 0.68 | 0.923452 |
Target: 5'- gUCGgcGcGggGCGCGGCUGCgaggGggCGCg -3' miRNA: 3'- -AGCuuC-UagCGCGUCGACGa---CuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 109391 | 0.68 | 0.923452 |
Target: 5'- gCGGAGG-CGgaGCGGCUGUUGGUCc- -3' miRNA: 3'- aGCUUCUaGCg-CGUCGACGACUAGcg -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 122718 | 0.68 | 0.923452 |
Target: 5'- gCGgcGAUCGCGacggccgaguccUGGCUGCUG-UUGCc -3' miRNA: 3'- aGCuuCUAGCGC------------GUCGACGACuAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 93821 | 0.68 | 0.92566 |
Target: 5'- cCGggGAcUCGCGCAgggccgcggccauccGCUcGCagaGGUCGCg -3' miRNA: 3'- aGCuuCU-AGCGCGU---------------CGA-CGa--CUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 101410 | 0.68 | 0.928898 |
Target: 5'- -aGggGGUCGUccGCAGCUgGC-GGUCGg -3' miRNA: 3'- agCuuCUAGCG--CGUCGA-CGaCUAGCg -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 21898 | 0.68 | 0.928898 |
Target: 5'- cCGAAGAacgucccgguUCGCGCAGCcgGCgGcUCGg -3' miRNA: 3'- aGCUUCU----------AGCGCGUCGa-CGaCuAGCg -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 113099 | 0.68 | 0.928898 |
Target: 5'- -gGGAGAUCGaGCcaaAGCgGCUGAcgCGCa -3' miRNA: 3'- agCUUCUAGCgCG---UCGaCGACUa-GCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 46247 | 0.68 | 0.934096 |
Target: 5'- gCGAAGAUCGUGUccucgaucucggGGCgcgGCagGAUcCGCg -3' miRNA: 3'- aGCUUCUAGCGCG------------UCGa--CGa-CUA-GCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 100982 | 0.68 | 0.934096 |
Target: 5'- gUCGAagacgcgccccAGAaaggccgccUCGCGCGGCgcgagGCagcgGAUCGCc -3' miRNA: 3'- -AGCU-----------UCU---------AGCGCGUCGa----CGa---CUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 100539 | 0.68 | 0.936106 |
Target: 5'- aCGGAGcUCGCGCGGCgcgaGCUccggcacgagacggcGGUgGCg -3' miRNA: 3'- aGCUUCuAGCGCGUCGa---CGA---------------CUAgCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 83725 | 0.68 | 0.936106 |
Target: 5'- aUCGAGaacgcgugccuGGcgGCGCAGCUGCccgcgcuguccgcgcUGAUCGCc -3' miRNA: 3'- -AGCUU-----------CUagCGCGUCGACG---------------ACUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 143237 | 0.67 | 0.938077 |
Target: 5'- cUCGAGGugcacagcaaGCaGCAGCUGgUGGUgGCg -3' miRNA: 3'- -AGCUUCuag-------CG-CGUCGACgACUAgCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 107664 | 0.67 | 0.939048 |
Target: 5'- gUCGAGGcucgcCGCGuCGGCgccaaGCUGGUgGCg -3' miRNA: 3'- -AGCUUCua---GCGC-GUCGa----CGACUAgCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 14743 | 0.67 | 0.939048 |
Target: 5'- cCGAGGGcUCcCGCGGCUGCUccGGggGCg -3' miRNA: 3'- aGCUUCU-AGcGCGUCGACGA--CUagCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 45513 | 0.67 | 0.939048 |
Target: 5'- gUGAacaGGGUcCGCagGCGGUUGCUG-UCGCa -3' miRNA: 3'- aGCU---UCUA-GCG--CGUCGACGACuAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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