Results 21 - 40 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21690 | 3' | -53.3 | NC_004812.1 | + | 144071 | 0.66 | 0.970069 |
Target: 5'- cCGggGGccUgGCGgAGCUGCUGGagGa -3' miRNA: 3'- aGCuuCU--AgCGCgUCGACGACUagCg -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 11921 | 0.66 | 0.970069 |
Target: 5'- gUGggGGUgGgGCGGCgggGCgggGGUgGCg -3' miRNA: 3'- aGCuuCUAgCgCGUCGa--CGa--CUAgCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 18402 | 0.66 | 0.970069 |
Target: 5'- gCGggGGaCgGCGUAGCaguacGCUgGGUCGCg -3' miRNA: 3'- aGCuuCUaG-CGCGUCGa----CGA-CUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 137269 | 0.66 | 0.966989 |
Target: 5'- cCGAGGGguucUCG-GCcccGGC-GCUGAUCGCc -3' miRNA: 3'- aGCUUCU----AGCgCG---UCGaCGACUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 12620 | 0.66 | 0.966989 |
Target: 5'- cCGguGAgCGUGUAGCUGUcGGUCuGCa -3' miRNA: 3'- aGCuuCUaGCGCGUCGACGaCUAG-CG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 55383 | 0.66 | 0.966989 |
Target: 5'- gUCGAGGccgGCGCGGCgccccUGCUGGcggcCGCg -3' miRNA: 3'- -AGCUUCuagCGCGUCG-----ACGACUa---GCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 76512 | 0.66 | 0.963691 |
Target: 5'- cCGAGGccGUCGa-CGGCUGCcUGGUCGa -3' miRNA: 3'- aGCUUC--UAGCgcGUCGACG-ACUAGCg -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 69586 | 0.66 | 0.963691 |
Target: 5'- uUCGuAGAUCGCguaccGCAGCaGCccGAacUCGCg -3' miRNA: 3'- -AGCuUCUAGCG-----CGUCGaCGa-CU--AGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 2719 | 0.66 | 0.96017 |
Target: 5'- cCGGAGGccagcacgGCGCGGC-GCaGGUCGCg -3' miRNA: 3'- aGCUUCUag------CGCGUCGaCGaCUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 125199 | 0.66 | 0.96017 |
Target: 5'- -gGGAGGUgGCGCGGCgccUGCcGGUCcuGCu -3' miRNA: 3'- agCUUCUAgCGCGUCG---ACGaCUAG--CG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 128227 | 0.66 | 0.96017 |
Target: 5'- cCGGAGGccagcacgGCGCGGC-GCaGGUCGCg -3' miRNA: 3'- aGCUUCUag------CGCGUCGaCGaCUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 83120 | 0.66 | 0.96017 |
Target: 5'- -aGAAGAgcgUUGCcCAGUUGCUGGccCGCg -3' miRNA: 3'- agCUUCU---AGCGcGUCGACGACUa-GCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 54766 | 0.66 | 0.96017 |
Target: 5'- gCGgcGcgCGgGCGGCUacgggggcgGCUGGUCGg -3' miRNA: 3'- aGCuuCuaGCgCGUCGA---------CGACUAGCg -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 122864 | 0.66 | 0.96017 |
Target: 5'- cUCGgcG-UCGCGCcGCgUGCgggGGUCGUu -3' miRNA: 3'- -AGCuuCuAGCGCGuCG-ACGa--CUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 153765 | 0.66 | 0.96017 |
Target: 5'- cUCGgcG-UCGCGCcGCgUGCgggGGUCGUu -3' miRNA: 3'- -AGCuuCuAGCGCGuCG-ACGa--CUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 136424 | 0.66 | 0.96017 |
Target: 5'- cUCGAAGA-CGCGCccGCUcGCccgGGUCGg -3' miRNA: 3'- -AGCUUCUaGCGCGu-CGA-CGa--CUAGCg -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 86745 | 0.66 | 0.959805 |
Target: 5'- cCGggGGUCcgcgucggccaugGCGCAGCgGCgacgcGggCGCg -3' miRNA: 3'- aGCuuCUAG-------------CGCGUCGaCGa----CuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 121133 | 0.66 | 0.959805 |
Target: 5'- cUCGggGAucUCGCGCGccgacgccgcggcGCUGCag--CGCu -3' miRNA: 3'- -AGCuuCU--AGCGCGU-------------CGACGacuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 64149 | 0.67 | 0.95642 |
Target: 5'- aUCGggGAcggCgGCGCGGCggGCUccgCGCg -3' miRNA: 3'- -AGCuuCUa--G-CGCGUCGa-CGAcuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 47756 | 0.67 | 0.95642 |
Target: 5'- aCGAGGucagCGcCGCGGC-GCUGGggGCg -3' miRNA: 3'- aGCUUCua--GC-GCGUCGaCGACUagCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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