miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 3' -53.3 NC_004812.1 + 78714 0.67 0.95642
Target:  5'- gUCGggGGUCgGC-CGGCUGg-GGUCGg -3'
miRNA:   3'- -AGCuuCUAG-CGcGUCGACgaCUAGCg -5'
21690 3' -53.3 NC_004812.1 + 64149 0.67 0.95642
Target:  5'- aUCGggGAcggCgGCGCGGCggGCUccgCGCg -3'
miRNA:   3'- -AGCuuCUa--G-CGCGUCGa-CGAcuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 108180 0.67 0.95642
Target:  5'- -gGAAGAUUGgcgucguacCGCAGCgGCgGGUCGUu -3'
miRNA:   3'- agCUUCUAGC---------GCGUCGaCGaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 128729 0.67 0.95642
Target:  5'- cCGAGG--CGCGCGGCgGCcGAaggCGCg -3'
miRNA:   3'- aGCUUCuaGCGCGUCGaCGaCUa--GCG- -5'
21690 3' -53.3 NC_004812.1 + 47756 0.67 0.95642
Target:  5'- aCGAGGucagCGcCGCGGC-GCUGGggGCg -3'
miRNA:   3'- aGCUUCua--GC-GCGUCGaCGACUagCG- -5'
21690 3' -53.3 NC_004812.1 + 30602 0.67 0.952436
Target:  5'- cCGggGGUCGgGCGGCgg--GAcCGCc -3'
miRNA:   3'- aGCuuCUAGCgCGUCGacgaCUaGCG- -5'
21690 3' -53.3 NC_004812.1 + 156058 0.67 0.952436
Target:  5'- gCGGGcGUCGCGCGGC-GC--GUCGCc -3'
miRNA:   3'- aGCUUcUAGCGCGUCGaCGacUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 106765 0.67 0.952436
Target:  5'- gUCGGAGGagGgGCGGCgucggGCgGggCGCg -3'
miRNA:   3'- -AGCUUCUagCgCGUCGa----CGaCuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 115757 0.67 0.952436
Target:  5'- -gGAGGGUCGgGCGGCacucGCUc-UCGCa -3'
miRNA:   3'- agCUUCUAGCgCGUCGa---CGAcuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 106417 0.67 0.952436
Target:  5'- gCGggGggC-CGCGGC-GCUcgaaGAUCGCg -3'
miRNA:   3'- aGCuuCuaGcGCGUCGaCGA----CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 124683 0.67 0.952436
Target:  5'- cCGggGAgCGaGCGGCcGC-GGUCGCu -3'
miRNA:   3'- aGCuuCUaGCgCGUCGaCGaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 30550 0.67 0.952436
Target:  5'- gCGGGcGUCGCGCGGC-GC--GUCGCc -3'
miRNA:   3'- aGCUUcUAGCGCGUCGaCGacUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 34432 0.67 0.948215
Target:  5'- cCGggGcGUCGCGCGGg-GUgggaUGGUCGUg -3'
miRNA:   3'- aGCuuC-UAGCGCGUCgaCG----ACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 11680 0.67 0.948215
Target:  5'- gCGAGcGGcacUCGgGCAGCUGCgGGUgGUa -3'
miRNA:   3'- aGCUU-CU---AGCgCGUCGACGaCUAgCG- -5'
21690 3' -53.3 NC_004812.1 + 47729 0.67 0.943753
Target:  5'- gCGAGGcggCGgGguGCUGCaGAaaaUCGCg -3'
miRNA:   3'- aGCUUCua-GCgCguCGACGaCU---AGCG- -5'
21690 3' -53.3 NC_004812.1 + 121884 0.67 0.943753
Target:  5'- aCGgcGAUCG-GCGGCUGCcGGUguacgaggCGCu -3'
miRNA:   3'- aGCuuCUAGCgCGUCGACGaCUA--------GCG- -5'
21690 3' -53.3 NC_004812.1 + 45513 0.67 0.939048
Target:  5'- gUGAacaGGGUcCGCagGCGGUUGCUG-UCGCa -3'
miRNA:   3'- aGCU---UCUA-GCG--CGUCGACGACuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 107664 0.67 0.939048
Target:  5'- gUCGAGGcucgcCGCGuCGGCgccaaGCUGGUgGCg -3'
miRNA:   3'- -AGCUUCua---GCGC-GUCGa----CGACUAgCG- -5'
21690 3' -53.3 NC_004812.1 + 14743 0.67 0.939048
Target:  5'- cCGAGGGcUCcCGCGGCUGCUccGGggGCg -3'
miRNA:   3'- aGCUUCU-AGcGCGUCGACGA--CUagCG- -5'
21690 3' -53.3 NC_004812.1 + 143237 0.67 0.938077
Target:  5'- cUCGAGGugcacagcaaGCaGCAGCUGgUGGUgGCg -3'
miRNA:   3'- -AGCUUCuag-------CG-CGUCGACgACUAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.