miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 3' -53.3 NC_004812.1 + 2719 0.66 0.96017
Target:  5'- cCGGAGGccagcacgGCGCGGC-GCaGGUCGCg -3'
miRNA:   3'- aGCUUCUag------CGCGUCGaCGaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 3220 0.66 0.972939
Target:  5'- cCGAGG--CGCGCGGCggGCcGAaggCGCg -3'
miRNA:   3'- aGCUUCuaGCGCGUCGa-CGaCUa--GCG- -5'
21690 3' -53.3 NC_004812.1 + 3455 0.72 0.767468
Target:  5'- gCGggGGUCGgGCccGGCggGC-GGUCGCg -3'
miRNA:   3'- aGCuuCUAGCgCG--UCGa-CGaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 3924 0.66 0.972939
Target:  5'- gCGggGc-CGCGCGGCgGCggcacgGcgCGCg -3'
miRNA:   3'- aGCuuCuaGCGCGUCGaCGa-----CuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 5846 0.74 0.656424
Target:  5'- cUCGAGGAaC-CGCGGCUGCcgucuacacGAUCGCg -3'
miRNA:   3'- -AGCUUCUaGcGCGUCGACGa--------CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 6161 0.66 0.972939
Target:  5'- gUCGggGGccUGgGCGGCggggGUUgGGUCGCg -3'
miRNA:   3'- -AGCuuCUa-GCgCGUCGa---CGA-CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 7626 0.74 0.666805
Target:  5'- cCGGAGA-CGCGCGGCgGCcggGGUCGg -3'
miRNA:   3'- aGCUUCUaGCGCGUCGaCGa--CUAGCg -5'
21690 3' -53.3 NC_004812.1 + 7898 0.73 0.687471
Target:  5'- cUCGAGGGUCGCccgcaggugucgGgGGCUGCgGcgCGCg -3'
miRNA:   3'- -AGCUUCUAGCG------------CgUCGACGaCuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 11503 0.74 0.625194
Target:  5'- cCGAcGcGUCGCGCAGCUGCaGGUUGa -3'
miRNA:   3'- aGCUuC-UAGCGCGUCGACGaCUAGCg -5'
21690 3' -53.3 NC_004812.1 + 11680 0.67 0.948215
Target:  5'- gCGAGcGGcacUCGgGCAGCUGCgGGUgGUa -3'
miRNA:   3'- aGCUU-CU---AGCgCGUCGACGaCUAgCG- -5'
21690 3' -53.3 NC_004812.1 + 11921 0.66 0.970069
Target:  5'- gUGggGGUgGgGCGGCgggGCgggGGUgGCg -3'
miRNA:   3'- aGCuuCUAgCgCGUCGa--CGa--CUAgCG- -5'
21690 3' -53.3 NC_004812.1 + 12620 0.66 0.966989
Target:  5'- cCGguGAgCGUGUAGCUGUcGGUCuGCa -3'
miRNA:   3'- aGCuuCUaGCGCGUCGACGaCUAG-CG- -5'
21690 3' -53.3 NC_004812.1 + 13033 0.76 0.54271
Target:  5'- cCGggGGUCGCGgGGCcgGCcccGGUCGCc -3'
miRNA:   3'- aGCuuCUAGCGCgUCGa-CGa--CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 14743 0.67 0.939048
Target:  5'- cCGAGGGcUCcCGCGGCUGCUccGGggGCg -3'
miRNA:   3'- aGCUUCU-AGcGCGUCGACGA--CUagCG- -5'
21690 3' -53.3 NC_004812.1 + 18402 0.66 0.970069
Target:  5'- gCGggGGaCgGCGUAGCaguacGCUgGGUCGCg -3'
miRNA:   3'- aGCuuCUaG-CGCGUCGa----CGA-CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 18873 0.74 0.666805
Target:  5'- cCGggGGUCG-GCGGCccGCgGGUCGCc -3'
miRNA:   3'- aGCuuCUAGCgCGUCGa-CGaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 20098 0.68 0.923452
Target:  5'- cUCGGAGGagcgcgccgCGCGCAGCgGCg---CGCg -3'
miRNA:   3'- -AGCUUCUa--------GCGCGUCGaCGacuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 21153 0.71 0.804786
Target:  5'- gUCGccGG-CGCGCAGCUcgcggaggaggcGCUGggCGCg -3'
miRNA:   3'- -AGCuuCUaGCGCGUCGA------------CGACuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 21898 0.68 0.928898
Target:  5'- cCGAAGAacgucccgguUCGCGCAGCcgGCgGcUCGg -3'
miRNA:   3'- aGCUUCU----------AGCGCGUCGa-CGaCuAGCg -5'
21690 3' -53.3 NC_004812.1 + 23486 0.71 0.804786
Target:  5'- gCGguGGUCGaGgGGCUGCUG-UCGCa -3'
miRNA:   3'- aGCuuCUAGCgCgUCGACGACuAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.