miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 3' -53.3 NC_004812.1 + 24502 0.66 0.972939
Target:  5'- aCGggGGgccccCGCGCcgcgggGGCUGC-GGUCGg -3'
miRNA:   3'- aGCuuCUa----GCGCG------UCGACGaCUAGCg -5'
21690 3' -53.3 NC_004812.1 + 26403 0.66 0.975603
Target:  5'- uUCGggGAUCGCcCG--UGggGGUCGCg -3'
miRNA:   3'- -AGCuuCUAGCGcGUcgACgaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 27349 0.68 0.911818
Target:  5'- cCGgcGccgcCGCGCcGCUGCUGG-CGCg -3'
miRNA:   3'- aGCuuCua--GCGCGuCGACGACUaGCG- -5'
21690 3' -53.3 NC_004812.1 + 27951 0.66 0.970069
Target:  5'- cCGAGGA-CGUGC-GCgUGCUGGUgcucuaCGCg -3'
miRNA:   3'- aGCUUCUaGCGCGuCG-ACGACUA------GCG- -5'
21690 3' -53.3 NC_004812.1 + 29235 0.69 0.885632
Target:  5'- gCGggGGUCGCGgAGgaGCgggccgGGgcugCGCg -3'
miRNA:   3'- aGCuuCUAGCGCgUCgaCGa-----CUa---GCG- -5'
21690 3' -53.3 NC_004812.1 + 29334 0.68 0.923452
Target:  5'- gUCGgcGcGggGCGCGGCUGCgaggGggCGCg -3'
miRNA:   3'- -AGCuuC-UagCGCGUCGACGa---CuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 29785 0.74 0.666805
Target:  5'- gCGAuGGUCGgGCAGCUGgUGGcaaacagacggcUCGCg -3'
miRNA:   3'- aGCUuCUAGCgCGUCGACgACU------------AGCG- -5'
21690 3' -53.3 NC_004812.1 + 29961 0.69 0.905633
Target:  5'- aCGggGcgCGCgaacaGCAGCUGCcGGagGCu -3'
miRNA:   3'- aGCuuCuaGCG-----CGUCGACGaCUagCG- -5'
21690 3' -53.3 NC_004812.1 + 30550 0.67 0.952436
Target:  5'- gCGGGcGUCGCGCGGC-GC--GUCGCc -3'
miRNA:   3'- aGCUUcUAGCGCGUCGaCGacUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 30602 0.67 0.952436
Target:  5'- cCGggGGUCGgGCGGCgg--GAcCGCc -3'
miRNA:   3'- aGCuuCUAGCgCGUCGacgaCUaGCG- -5'
21690 3' -53.3 NC_004812.1 + 30934 0.69 0.899205
Target:  5'- cUGAAGAUCGCGCGGCccgagGCcuccccgagGGUCa- -3'
miRNA:   3'- aGCUUCUAGCGCGUCGa----CGa--------CUAGcg -5'
21690 3' -53.3 NC_004812.1 + 34432 0.67 0.948215
Target:  5'- cCGggGcGUCGCGCGGg-GUgggaUGGUCGUg -3'
miRNA:   3'- aGCuuC-UAGCGCGUCgaCG----ACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 35837 0.71 0.813733
Target:  5'- gUCGcGGuacUUGCGCAGCaGCgcggGGUCGCu -3'
miRNA:   3'- -AGCuUCu--AGCGCGUCGaCGa---CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 37062 0.66 0.972939
Target:  5'- gUCGggGGccUGgGCGGCggggGUUgGGUCGCg -3'
miRNA:   3'- -AGCuuCUa-GCgCGUCGa---CGA-CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 38527 0.74 0.666805
Target:  5'- cCGGAGA-CGCGCGGCgGCcggGGUCGg -3'
miRNA:   3'- aGCUUCUaGCGCGUCGaCGa--CUAGCg -5'
21690 3' -53.3 NC_004812.1 + 38799 0.73 0.687471
Target:  5'- cUCGAGGGUCGCccgcaggugucgGgGGCUGCgGcgCGCg -3'
miRNA:   3'- -AGCUUCUAGCG------------CgUCGACGaCuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 42026 0.66 0.975603
Target:  5'- gCGggGG-CGCGCGGC-GCcaagCGCa -3'
miRNA:   3'- aGCuuCUaGCGCGUCGaCGacuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 44175 0.75 0.614784
Target:  5'- aUCGAGGGUgUGCGCGGC-GCUGGggGCc -3'
miRNA:   3'- -AGCUUCUA-GCGCGUCGaCGACUagCG- -5'
21690 3' -53.3 NC_004812.1 + 44257 0.69 0.905633
Target:  5'- gCGAGGGcCGa-UAGCcGCUGGUCGCg -3'
miRNA:   3'- aGCUUCUaGCgcGUCGaCGACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 44485 0.66 0.975603
Target:  5'- gUCGAAGAU-GCGCcGCUGgaucucCUGcUCGUa -3'
miRNA:   3'- -AGCUUCUAgCGCGuCGAC------GACuAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.