miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 3' -53.3 NC_004812.1 + 45513 0.67 0.939048
Target:  5'- gUGAacaGGGUcCGCagGCGGUUGCUG-UCGCa -3'
miRNA:   3'- aGCU---UCUA-GCG--CGUCGACGACuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 45621 0.72 0.767468
Target:  5'- cUGgcGGUCGCGCGGCUGUUc--CGCc -3'
miRNA:   3'- aGCuuCUAGCGCGUCGACGAcuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 46247 0.68 0.934096
Target:  5'- gCGAAGAUCGUGUccucgaucucggGGCgcgGCagGAUcCGCg -3'
miRNA:   3'- aGCUUCUAGCGCG------------UCGa--CGa-CUA-GCG- -5'
21690 3' -53.3 NC_004812.1 + 47729 0.67 0.943753
Target:  5'- gCGAGGcggCGgGguGCUGCaGAaaaUCGCg -3'
miRNA:   3'- aGCUUCua-GCgCguCGACGaCU---AGCG- -5'
21690 3' -53.3 NC_004812.1 + 47756 0.67 0.95642
Target:  5'- aCGAGGucagCGcCGCGGC-GCUGGggGCg -3'
miRNA:   3'- aGCUUCua--GC-GCGUCGaCGACUagCG- -5'
21690 3' -53.3 NC_004812.1 + 49912 0.68 0.917759
Target:  5'- -------aCGCGCAGCgacgGCUgGAUCGCc -3'
miRNA:   3'- agcuucuaGCGCGUCGa---CGA-CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 50133 0.69 0.891174
Target:  5'- gCGggGcucaucgcgugCGCGCAGCUGgaGcgCGUg -3'
miRNA:   3'- aGCuuCua---------GCGCGUCGACgaCuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 52246 0.73 0.697738
Target:  5'- -gGGAGGUgCGgGCGGCUgGUUGGUUGCg -3'
miRNA:   3'- agCUUCUA-GCgCGUCGA-CGACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 52653 0.7 0.855742
Target:  5'- gCGAAGcggaGCGCGuGgaGCUGGUUGCg -3'
miRNA:   3'- aGCUUCuag-CGCGU-CgaCGACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 54652 0.71 0.822509
Target:  5'- aCGggGGUCGcCGCcgcggggcccAGCgGCcgGGUCGCg -3'
miRNA:   3'- aGCuuCUAGC-GCG----------UCGaCGa-CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 54766 0.66 0.96017
Target:  5'- gCGgcGcgCGgGCGGCUacgggggcgGCUGGUCGg -3'
miRNA:   3'- aGCuuCuaGCgCGUCGA---------CGACUAGCg -5'
21690 3' -53.3 NC_004812.1 + 55383 0.66 0.966989
Target:  5'- gUCGAGGccgGCGCGGCgccccUGCUGGcggcCGCg -3'
miRNA:   3'- -AGCUUCuagCGCGUCG-----ACGACUa---GCG- -5'
21690 3' -53.3 NC_004812.1 + 55510 0.7 0.858889
Target:  5'- gCGAAGGUCGCcgGCAGCaccucgccguggacGCUGAccCGCa -3'
miRNA:   3'- aGCUUCUAGCG--CGUCGa-------------CGACUa-GCG- -5'
21690 3' -53.3 NC_004812.1 + 56143 0.66 0.970069
Target:  5'- cCGAcgccagccAGAaC-CGCAGCUcGCUGAUgGCg -3'
miRNA:   3'- aGCU--------UCUaGcGCGUCGA-CGACUAgCG- -5'
21690 3' -53.3 NC_004812.1 + 56599 0.7 0.842826
Target:  5'- gCGAcGAUCGCGCGGCgcgagcucccugagGCUGGcgaGCu -3'
miRNA:   3'- aGCUuCUAGCGCGUCGa-------------CGACUag-CG- -5'
21690 3' -53.3 NC_004812.1 + 56796 0.69 0.892537
Target:  5'- cCGgcGccguUCGCGCGGCgcaGCUGGcggCGCg -3'
miRNA:   3'- aGCuuCu---AGCGCGUCGa--CGACUa--GCG- -5'
21690 3' -53.3 NC_004812.1 + 58020 0.73 0.677158
Target:  5'- cUCGgcGAUgaugcCGCGCAGCUGC---UCGCa -3'
miRNA:   3'- -AGCuuCUA-----GCGCGUCGACGacuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 59285 0.72 0.738138
Target:  5'- cUCGAccAGGUUGCGCaucAGCUGCUccaccUCGCg -3'
miRNA:   3'- -AGCU--UCUAGCGCG---UCGACGAcu---AGCG- -5'
21690 3' -53.3 NC_004812.1 + 59966 0.72 0.757803
Target:  5'- aCGggG-UCGCGCGGCgccgGCUcGUgGCg -3'
miRNA:   3'- aGCuuCuAGCGCGUCGa---CGAcUAgCG- -5'
21690 3' -53.3 NC_004812.1 + 61547 0.7 0.831106
Target:  5'- gCGgcGGUCGCGUAGCcGCUcg-CGCc -3'
miRNA:   3'- aGCuuCUAGCGCGUCGaCGAcuaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.