miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 3' -53.3 NC_004812.1 + 62363 0.71 0.813733
Target:  5'- cCGGAGAUgCGCGuCGGCgUGCacgacGGUCGCc -3'
miRNA:   3'- aGCUUCUA-GCGC-GUCG-ACGa----CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 64149 0.67 0.95642
Target:  5'- aUCGggGAcggCgGCGCGGCggGCUccgCGCg -3'
miRNA:   3'- -AGCuuCUa--G-CGCGUCGa-CGAcuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 65532 0.69 0.885632
Target:  5'- cCGAGGccaagCgGCGCaAGCUGCUGGUCu- -3'
miRNA:   3'- aGCUUCua---G-CGCG-UCGACGACUAGcg -5'
21690 3' -53.3 NC_004812.1 + 66572 0.71 0.813733
Target:  5'- gCGGAGGgaCGaGCGGCUGCgcgucGAUCGCc -3'
miRNA:   3'- aGCUUCUa-GCgCGUCGACGa----CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 67554 0.72 0.728157
Target:  5'- gUCGGcgcagAGGUCGaucaGCAGCUcCUGGUCGUa -3'
miRNA:   3'- -AGCU-----UCUAGCg---CGUCGAcGACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 69334 0.69 0.899205
Target:  5'- cUCGuGGG-CGCGCAGCUGCUccaccaGCu -3'
miRNA:   3'- -AGCuUCUaGCGCGUCGACGAcuag--CG- -5'
21690 3' -53.3 NC_004812.1 + 69586 0.66 0.963691
Target:  5'- uUCGuAGAUCGCguaccGCAGCaGCccGAacUCGCg -3'
miRNA:   3'- -AGCuUCUAGCG-----CGUCGaCGa-CU--AGCG- -5'
21690 3' -53.3 NC_004812.1 + 69862 0.7 0.84773
Target:  5'- aCGAccGGGUCgGCcCGGC-GCUGGUCGCc -3'
miRNA:   3'- aGCU--UCUAG-CGcGUCGaCGACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 70118 0.66 0.975603
Target:  5'- gCGccGggCGCGUGGCUGCgGccCGCg -3'
miRNA:   3'- aGCuuCuaGCGCGUCGACGaCuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 71999 0.66 0.975603
Target:  5'- gUCGAGGAgauagggcCGuCGCGGCgaGCcccggugGGUCGCa -3'
miRNA:   3'- -AGCUUCUa-------GC-GCGUCGa-CGa------CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 72059 0.68 0.923452
Target:  5'- gUCGggGG-CGCuggggGCGGCgGCUGuuUCGCc -3'
miRNA:   3'- -AGCuuCUaGCG-----CGUCGaCGACu-AGCG- -5'
21690 3' -53.3 NC_004812.1 + 74745 0.84 0.201575
Target:  5'- cUGGAGcgCGCGCAGCUGCUcGcgCGCg -3'
miRNA:   3'- aGCUUCuaGCGCGUCGACGA-CuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 74856 0.73 0.712013
Target:  5'- gCGGAGAacaUCGaGCAGCUGCUccgcgagcugcacgcGAUCGUg -3'
miRNA:   3'- aGCUUCU---AGCgCGUCGACGA---------------CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 76512 0.66 0.963691
Target:  5'- cCGAGGccGUCGa-CGGCUGCcUGGUCGa -3'
miRNA:   3'- aGCUUC--UAGCgcGUCGACG-ACUAGCg -5'
21690 3' -53.3 NC_004812.1 + 78034 0.7 0.855742
Target:  5'- -aGAAGGcgcUCGaCGC-GCUGCggGAUCGCc -3'
miRNA:   3'- agCUUCU---AGC-GCGuCGACGa-CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 78714 0.67 0.95642
Target:  5'- gUCGggGGUCgGC-CGGCUGg-GGUCGg -3'
miRNA:   3'- -AGCuuCUAG-CGcGUCGACgaCUAGCg -5'
21690 3' -53.3 NC_004812.1 + 78792 0.67 0.95642
Target:  5'- gUCGggGGUCgGC-CGGCUGg-GGUCGg -3'
miRNA:   3'- -AGCuuCUAG-CGcGUCGACgaCUAGCg -5'
21690 3' -53.3 NC_004812.1 + 80309 0.72 0.777008
Target:  5'- aCGgcGAcCGCGCcgcGCUGCUGGagGCg -3'
miRNA:   3'- aGCuuCUaGCGCGu--CGACGACUagCG- -5'
21690 3' -53.3 NC_004812.1 + 80892 0.73 0.707948
Target:  5'- aCGGAGccgcUgGCGCGGCUGCUG--CGCa -3'
miRNA:   3'- aGCUUCu---AgCGCGUCGACGACuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 81558 0.7 0.839516
Target:  5'- gUCGAccAGAUCGaGCuGCUGCUGGa-GCa -3'
miRNA:   3'- -AGCU--UCUAGCgCGuCGACGACUagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.