miRNA display CGI


Results 121 - 140 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 3' -53.3 NC_004812.1 + 121133 0.66 0.959805
Target:  5'- cUCGggGAucUCGCGCGccgacgccgcggcGCUGCag--CGCu -3'
miRNA:   3'- -AGCuuCU--AGCGCGU-------------CGACGacuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 121311 0.71 0.822509
Target:  5'- gCGguGAUCGCGCGGgUGCUGcccacccggcUCGUg -3'
miRNA:   3'- aGCuuCUAGCGCGUCgACGACu---------AGCG- -5'
21690 3' -53.3 NC_004812.1 + 121540 0.75 0.583666
Target:  5'- gCGAGaucGUCGCGCGGCUGgUGG-CGCg -3'
miRNA:   3'- aGCUUc--UAGCGCGUCGACgACUaGCG- -5'
21690 3' -53.3 NC_004812.1 + 121884 0.67 0.943753
Target:  5'- aCGgcGAUCG-GCGGCUGCcGGUguacgaggCGCu -3'
miRNA:   3'- aGCuuCUAGCgCGUCGACGaCUA--------GCG- -5'
21690 3' -53.3 NC_004812.1 + 122718 0.68 0.923452
Target:  5'- gCGgcGAUCGCGacggccgaguccUGGCUGCUG-UUGCc -3'
miRNA:   3'- aGCuuCUAGCGC------------GUCGACGACuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 122864 0.66 0.96017
Target:  5'- cUCGgcG-UCGCGCcGCgUGCgggGGUCGUu -3'
miRNA:   3'- -AGCuuCuAGCGCGuCG-ACGa--CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 124683 0.67 0.952436
Target:  5'- cCGggGAgCGaGCGGCcGC-GGUCGCu -3'
miRNA:   3'- aGCuuCUaGCgCGUCGaCGaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 125199 0.66 0.96017
Target:  5'- -gGGAGGUgGCGCGGCgccUGCcGGUCcuGCu -3'
miRNA:   3'- agCUUCUAgCGCGUCG---ACGaCUAG--CG- -5'
21690 3' -53.3 NC_004812.1 + 126627 0.74 0.652265
Target:  5'- aUCGAGGG-CGacggcagccuccgGCAGCUGCUGuUCGCg -3'
miRNA:   3'- -AGCUUCUaGCg------------CGUCGACGACuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 127577 0.67 0.95642
Target:  5'- gCGAAG-UCGCGgacgaaguggacCAGCUGCUGGaaggccUCGg -3'
miRNA:   3'- aGCUUCuAGCGC------------GUCGACGACU------AGCg -5'
21690 3' -53.3 NC_004812.1 + 128156 0.74 0.666805
Target:  5'- gCGGaccGGGUCGCGCGGC-GCUGcGUCGg -3'
miRNA:   3'- aGCU---UCUAGCGCGUCGaCGAC-UAGCg -5'
21690 3' -53.3 NC_004812.1 + 128227 0.66 0.96017
Target:  5'- cCGGAGGccagcacgGCGCGGC-GCaGGUCGCg -3'
miRNA:   3'- aGCUUCUag------CGCGUCGaCGaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 128729 0.67 0.95642
Target:  5'- cCGAGG--CGCGCGGCgGCcGAaggCGCg -3'
miRNA:   3'- aGCUUCuaGCGCGUCGaCGaCUa--GCG- -5'
21690 3' -53.3 NC_004812.1 + 128963 0.72 0.767468
Target:  5'- gCGggGGUCGgGCccGGCggGC-GGUCGCg -3'
miRNA:   3'- aGCuuCUAGCgCG--UCGa-CGaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 129432 0.66 0.972939
Target:  5'- gCGggGc-CGCGCGGCgGCggcacgGcgCGCg -3'
miRNA:   3'- aGCuuCuaGCGCGUCGaCGa-----CuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 130703 0.66 0.975603
Target:  5'- gCGAcGcgCGCccGCGGC-GCUGggCGCg -3'
miRNA:   3'- aGCUuCuaGCG--CGUCGaCGACuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 131354 0.74 0.656424
Target:  5'- cUCGAGGAaC-CGCGGCUGCcgucuacacGAUCGCg -3'
miRNA:   3'- -AGCUUCUaGcGCGUCGACGa--------CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 136424 0.66 0.96017
Target:  5'- cUCGAAGA-CGCGCccGCUcGCccgGGUCGg -3'
miRNA:   3'- -AGCUUCUaGCGCGu-CGA-CGa--CUAGCg -5'
21690 3' -53.3 NC_004812.1 + 137269 0.66 0.966989
Target:  5'- cCGAGGGguucUCG-GCcccGGC-GCUGAUCGCc -3'
miRNA:   3'- aGCUUCU----AGCgCG---UCGaCGACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 137348 0.75 0.573356
Target:  5'- aCGgcGcUCGCccgGCAGCUGCUGggCGCc -3'
miRNA:   3'- aGCuuCuAGCG---CGUCGACGACuaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.