miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 3' -53.3 NC_004812.1 + 115019 0.7 0.855742
Target:  5'- gUCGAGGAacacuUCGUGCucgcccacgGGCUGCacGUCGCu -3'
miRNA:   3'- -AGCUUCU-----AGCGCG---------UCGACGacUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 113232 0.7 0.855742
Target:  5'- cUCGGAG--CGCGCGGCcGCgGAgCGCg -3'
miRNA:   3'- -AGCUUCuaGCGCGUCGaCGaCUaGCG- -5'
21690 3' -53.3 NC_004812.1 + 113099 0.68 0.928898
Target:  5'- -gGGAGAUCGaGCcaaAGCgGCUGAcgCGCa -3'
miRNA:   3'- agCUUCUAGCgCG---UCGaCGACUa-GCG- -5'
21690 3' -53.3 NC_004812.1 + 112362 0.7 0.84773
Target:  5'- gCGgcGAUCGCGCu-CUGCcgGAcUCGCg -3'
miRNA:   3'- aGCuuCUAGCGCGucGACGa-CU-AGCG- -5'
21690 3' -53.3 NC_004812.1 + 112310 0.7 0.863545
Target:  5'- cUCGA--GUCGCGCcucgGGCgGCUGGcCGCg -3'
miRNA:   3'- -AGCUucUAGCGCG----UCGaCGACUaGCG- -5'
21690 3' -53.3 NC_004812.1 + 110796 0.77 0.464121
Target:  5'- gUGGAGGcguUCGCGCuagAGCUGCUGGggCGCa -3'
miRNA:   3'- aGCUUCU---AGCGCG---UCGACGACUa-GCG- -5'
21690 3' -53.3 NC_004812.1 + 110368 0.71 0.799339
Target:  5'- aUCGAGGAcacgaucuUCGCGCucuucugcgcccccgAGCUGCUGGaCGg -3'
miRNA:   3'- -AGCUUCU--------AGCGCG---------------UCGACGACUaGCg -5'
21690 3' -53.3 NC_004812.1 + 109391 0.68 0.923452
Target:  5'- gCGGAGG-CGgaGCGGCUGUUGGUCc- -3'
miRNA:   3'- aGCUUCUaGCg-CGUCGACGACUAGcg -5'
21690 3' -53.3 NC_004812.1 + 108180 0.67 0.95642
Target:  5'- -gGAAGAUUGgcgucguacCGCAGCgGCgGGUCGUu -3'
miRNA:   3'- agCUUCUAGC---------GCGUCGaCGaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 107940 0.75 0.614784
Target:  5'- cCGAGGAggccggccaUCGCGCGGCgagGCgcggGAUCGg -3'
miRNA:   3'- aGCUUCU---------AGCGCGUCGa--CGa---CUAGCg -5'
21690 3' -53.3 NC_004812.1 + 107664 0.67 0.939048
Target:  5'- gUCGAGGcucgcCGCGuCGGCgccaaGCUGGUgGCg -3'
miRNA:   3'- -AGCUUCua---GCGC-GUCGa----CGACUAgCG- -5'
21690 3' -53.3 NC_004812.1 + 106881 1.13 0.002791
Target:  5'- cUCGAAGAUCGCGCAGCUGCUGAUCGCg -3'
miRNA:   3'- -AGCUUCUAGCGCGUCGACGACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 106765 0.67 0.952436
Target:  5'- gUCGGAGGagGgGCGGCgucggGCgGggCGCg -3'
miRNA:   3'- -AGCUUCUagCgCGUCGa----CGaCuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 106417 0.67 0.952436
Target:  5'- gCGggGggC-CGCGGC-GCUcgaaGAUCGCg -3'
miRNA:   3'- aGCuuCuaGcGCGUCGaCGA----CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 105878 0.69 0.878495
Target:  5'- gUCGuGGG-CGCGCGGUgcGCUGGcgcUCGCg -3'
miRNA:   3'- -AGCuUCUaGCGCGUCGa-CGACU---AGCG- -5'
21690 3' -53.3 NC_004812.1 + 105169 0.78 0.427102
Target:  5'- gCGggGGUCGCGU-GCgGCUGGUgGCg -3'
miRNA:   3'- aGCuuCUAGCGCGuCGaCGACUAgCG- -5'
21690 3' -53.3 NC_004812.1 + 103333 0.69 0.892537
Target:  5'- gUCGAGu-UCGCGCGGCUGCaGuucaCGUa -3'
miRNA:   3'- -AGCUUcuAGCGCGUCGACGaCua--GCG- -5'
21690 3' -53.3 NC_004812.1 + 102946 0.66 0.975603
Target:  5'- gCGggGGUgGCGgGGggGCgucggGGUCGUa -3'
miRNA:   3'- aGCuuCUAgCGCgUCgaCGa----CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 102309 0.73 0.71809
Target:  5'- gCGAucaaGGAUcCG-GCGGCUGCUG-UCGCg -3'
miRNA:   3'- aGCU----UCUA-GCgCGUCGACGACuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 101410 0.68 0.928898
Target:  5'- -aGggGGUCGUccGCAGCUgGC-GGUCGg -3'
miRNA:   3'- agCuuCUAGCG--CGUCGA-CGaCUAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.