Results 61 - 80 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21690 | 3' | -53.3 | NC_004812.1 | + | 100982 | 0.68 | 0.934096 |
Target: 5'- gUCGAagacgcgccccAGAaaggccgccUCGCGCGGCgcgagGCagcgGAUCGCc -3' miRNA: 3'- -AGCU-----------UCU---------AGCGCGUCGa----CGa---CUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 100539 | 0.68 | 0.936106 |
Target: 5'- aCGGAGcUCGCGCGGCgcgaGCUccggcacgagacggcGGUgGCg -3' miRNA: 3'- aGCUUCuAGCGCGUCGa---CGA---------------CUAgCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 100289 | 0.69 | 0.871131 |
Target: 5'- cUCGGAGGcggCGCGCGcGCgcgcGCUGcgCGUg -3' miRNA: 3'- -AGCUUCUa--GCGCGU-CGa---CGACuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 98313 | 0.75 | 0.583666 |
Target: 5'- cCGgcGG-CGCGCGGgUGCUGGcUCGCg -3' miRNA: 3'- aGCuuCUaGCGCGUCgACGACU-AGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 96169 | 0.69 | 0.871131 |
Target: 5'- uUCGAGGG-CG-GCGGCgaGgUGGUCGCg -3' miRNA: 3'- -AGCUUCUaGCgCGUCGa-CgACUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 95004 | 0.69 | 0.905633 |
Target: 5'- gUGGAGcucgcUCGCGCAGgUGCUGGg-GCu -3' miRNA: 3'- aGCUUCu----AGCGCGUCgACGACUagCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 93821 | 0.68 | 0.92566 |
Target: 5'- cCGggGAcUCGCGCAgggccgcggccauccGCUcGCagaGGUCGCg -3' miRNA: 3'- aGCuuCU-AGCGCGU---------------CGA-CGa--CUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 91578 | 0.71 | 0.795676 |
Target: 5'- gUUGGAGAagGCGguGCUG--GGUCGCg -3' miRNA: 3'- -AGCUUCUagCGCguCGACgaCUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 88295 | 0.7 | 0.855742 |
Target: 5'- aCGAGGcgCucuGCgGCgAGCUGCUGGUgGCg -3' miRNA: 3'- aGCUUCuaG---CG-CG-UCGACGACUAgCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 86745 | 0.66 | 0.959805 |
Target: 5'- cCGggGGUCcgcgucggccaugGCGCAGCgGCgacgcGggCGCg -3' miRNA: 3'- aGCuuCUAG-------------CGCGUCGaCGa----CuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 83725 | 0.68 | 0.936106 |
Target: 5'- aUCGAGaacgcgugccuGGcgGCGCAGCUGCccgcgcuguccgcgcUGAUCGCc -3' miRNA: 3'- -AGCUU-----------CUagCGCGUCGACG---------------ACUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 83493 | 0.66 | 0.972939 |
Target: 5'- gUCGggGAgCGCGaCGGCcagGC-GGUgCGCg -3' miRNA: 3'- -AGCuuCUaGCGC-GUCGa--CGaCUA-GCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 83120 | 0.66 | 0.96017 |
Target: 5'- -aGAAGAgcgUUGCcCAGUUGCUGGccCGCg -3' miRNA: 3'- agCUUCU---AGCGcGUCGACGACUa-GCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 83053 | 0.74 | 0.656424 |
Target: 5'- cCGGAGGUC-CGCGuGCUGCccgcGGUCGCu -3' miRNA: 3'- aGCUUCUAGcGCGU-CGACGa---CUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 82085 | 0.69 | 0.892537 |
Target: 5'- aUCGAGGG-CGCGUGGCccgGCUGGcCGg -3' miRNA: 3'- -AGCUUCUaGCGCGUCGa--CGACUaGCg -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 81854 | 0.75 | 0.604387 |
Target: 5'- cUCGggGccgCGCGCgAGCaGCUGcgCGCg -3' miRNA: 3'- -AGCuuCua-GCGCG-UCGaCGACuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 81558 | 0.7 | 0.839516 |
Target: 5'- gUCGAccAGAUCGaGCuGCUGCUGGa-GCa -3' miRNA: 3'- -AGCU--UCUAGCgCGuCGACGACUagCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 80892 | 0.73 | 0.707948 |
Target: 5'- aCGGAGccgcUgGCGCGGCUGCUG--CGCa -3' miRNA: 3'- aGCUUCu---AgCGCGUCGACGACuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 80309 | 0.72 | 0.777008 |
Target: 5'- aCGgcGAcCGCGCcgcGCUGCUGGagGCg -3' miRNA: 3'- aGCuuCUaGCGCGu--CGACGACUagCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 78792 | 0.67 | 0.95642 |
Target: 5'- gUCGggGGUCgGC-CGGCUGg-GGUCGg -3' miRNA: 3'- -AGCuuCUAG-CGcGUCGACgaCUAGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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