miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 3' -53.3 NC_004812.1 + 21153 0.71 0.804786
Target:  5'- gUCGccGG-CGCGCAGCUcgcggaggaggcGCUGggCGCg -3'
miRNA:   3'- -AGCuuCUaGCGCGUCGA------------CGACuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 23486 0.71 0.804786
Target:  5'- gCGguGGUCGaGgGGCUGCUG-UCGCa -3'
miRNA:   3'- aGCuuCUAGCgCgUCGACGACuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 131354 0.74 0.656424
Target:  5'- cUCGAGGAaC-CGCGGCUGCcgucuacacGAUCGCg -3'
miRNA:   3'- -AGCUUCUaGcGCGUCGACGa--------CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 107940 0.75 0.614784
Target:  5'- cCGAGGAggccggccaUCGCGCGGCgagGCgcggGAUCGg -3'
miRNA:   3'- aGCUUCU---------AGCGCGUCGa--CGa---CUAGCg -5'
21690 3' -53.3 NC_004812.1 + 44175 0.75 0.614784
Target:  5'- aUCGAGGGUgUGCGCGGC-GCUGGggGCc -3'
miRNA:   3'- -AGCUUCUA-GCGCGUCGaCGACUagCG- -5'
21690 3' -53.3 NC_004812.1 + 98313 0.75 0.583666
Target:  5'- cCGgcGG-CGCGCGGgUGCUGGcUCGCg -3'
miRNA:   3'- aGCuuCUaGCGCGUCgACGACU-AGCG- -5'
21690 3' -53.3 NC_004812.1 + 137348 0.75 0.573356
Target:  5'- aCGgcGcUCGCccgGCAGCUGCUGggCGCc -3'
miRNA:   3'- aGCuuCuAGCG---CGUCGACGACuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 13033 0.76 0.54271
Target:  5'- cCGggGGUCGCGgGGCcgGCcccGGUCGCc -3'
miRNA:   3'- aGCuuCUAGCGCgUCGa-CGa--CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 110796 0.77 0.464121
Target:  5'- gUGGAGGcguUCGCGCuagAGCUGCUGGggCGCa -3'
miRNA:   3'- aGCUUCU---AGCGCG---UCGACGACUa-GCG- -5'
21690 3' -53.3 NC_004812.1 + 74745 0.84 0.201575
Target:  5'- cUGGAGcgCGCGCAGCUGCUcGcgCGCg -3'
miRNA:   3'- aGCUUCuaGCGCGUCGACGA-CuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 29785 0.74 0.666805
Target:  5'- gCGAuGGUCGgGCAGCUGgUGGcaaacagacggcUCGCg -3'
miRNA:   3'- aGCUuCUAGCgCGUCGACgACU------------AGCG- -5'
21690 3' -53.3 NC_004812.1 + 18873 0.74 0.666805
Target:  5'- cCGggGGUCG-GCGGCccGCgGGUCGCc -3'
miRNA:   3'- aGCuuCUAGCgCGUCGa-CGaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 91578 0.71 0.795676
Target:  5'- gUUGGAGAagGCGguGCUG--GGUCGCg -3'
miRNA:   3'- -AGCUUCUagCGCguCGACgaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 128963 0.72 0.767468
Target:  5'- gCGggGGUCGgGCccGGCggGC-GGUCGCg -3'
miRNA:   3'- aGCuuCUAGCgCG--UCGa-CGaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 59285 0.72 0.738138
Target:  5'- cUCGAccAGGUUGCGCaucAGCUGCUccaccUCGCg -3'
miRNA:   3'- -AGCU--UCUAGCGCG---UCGACGAcu---AGCG- -5'
21690 3' -53.3 NC_004812.1 + 102309 0.73 0.71809
Target:  5'- gCGAucaaGGAUcCG-GCGGCUGCUG-UCGCg -3'
miRNA:   3'- aGCU----UCUA-GCgCGUCGACGACuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 147429 0.73 0.717079
Target:  5'- uUCGAgcggcaGGGUCuguagguGCGCGGacgGCUGGUCGCa -3'
miRNA:   3'- -AGCU------UCUAG-------CGCGUCga-CGACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 7898 0.73 0.687471
Target:  5'- cUCGAGGGUCGCccgcaggugucgGgGGCUGCgGcgCGCg -3'
miRNA:   3'- -AGCUUCUAGCG------------CgUCGACGaCuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 58020 0.73 0.677158
Target:  5'- cUCGgcGAUgaugcCGCGCAGCUGC---UCGCa -3'
miRNA:   3'- -AGCuuCUA-----GCGCGUCGACGacuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 7626 0.74 0.666805
Target:  5'- cCGGAGA-CGCGCGGCgGCcggGGUCGg -3'
miRNA:   3'- aGCUUCUaGCGCGUCGaCGa--CUAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.