miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 3' -53.3 NC_004812.1 + 50133 0.69 0.891174
Target:  5'- gCGggGcucaucgcgugCGCGCAGCUGgaGcgCGUg -3'
miRNA:   3'- aGCuuCua---------GCGCGUCGACgaCuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 154743 0.69 0.885632
Target:  5'- gCGggGGUCGCGgAGgaGCgggccgGGgcugCGCg -3'
miRNA:   3'- aGCuuCUAGCGCgUCgaCGa-----CUa---GCG- -5'
21690 3' -53.3 NC_004812.1 + 65532 0.69 0.885632
Target:  5'- cCGAGGccaagCgGCGCaAGCUGCUGGUCu- -3'
miRNA:   3'- aGCUUCua---G-CGCG-UCGACGACUAGcg -5'
21690 3' -53.3 NC_004812.1 + 96169 0.69 0.871131
Target:  5'- uUCGAGGG-CG-GCGGCgaGgUGGUCGCg -3'
miRNA:   3'- -AGCUUCUaGCgCGUCGa-CgACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 55510 0.7 0.858889
Target:  5'- gCGAAGGUCGCcgGCAGCaccucgccguggacGCUGAccCGCa -3'
miRNA:   3'- aGCUUCUAGCG--CGUCGa-------------CGACUa-GCG- -5'
21690 3' -53.3 NC_004812.1 + 113232 0.7 0.855742
Target:  5'- cUCGGAG--CGCGCGGCcGCgGAgCGCg -3'
miRNA:   3'- -AGCUUCuaGCGCGUCGaCGaCUaGCG- -5'
21690 3' -53.3 NC_004812.1 + 52653 0.7 0.855742
Target:  5'- gCGAAGcggaGCGCGuGgaGCUGGUUGCg -3'
miRNA:   3'- aGCUUCuag-CGCGU-CgaCGACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 21153 0.71 0.804786
Target:  5'- gUCGccGG-CGCGCAGCUcgcggaggaggcGCUGggCGCg -3'
miRNA:   3'- -AGCuuCUaGCGCGUCGA------------CGACuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 66572 0.71 0.813733
Target:  5'- gCGGAGGgaCGaGCGGCUGCgcgucGAUCGCc -3'
miRNA:   3'- aGCUUCUa-GCgCGUCGACGa----CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 35837 0.71 0.813733
Target:  5'- gUCGcGGuacUUGCGCAGCaGCgcggGGUCGCu -3'
miRNA:   3'- -AGCuUCu--AGCGCGUCGaCGa---CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 62363 0.71 0.813733
Target:  5'- cCGGAGAUgCGCGuCGGCgUGCacgacGGUCGCc -3'
miRNA:   3'- aGCUUCUA-GCGC-GUCG-ACGa----CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 147848 0.71 0.822509
Target:  5'- gUCGAGGcUCuCGCGGCUGCcuggggGGUCGg -3'
miRNA:   3'- -AGCUUCuAGcGCGUCGACGa-----CUAGCg -5'
21690 3' -53.3 NC_004812.1 + 54652 0.71 0.822509
Target:  5'- aCGggGGUCGcCGCcgcggggcccAGCgGCcgGGUCGCg -3'
miRNA:   3'- aGCuuCUAGC-GCG----------UCGaCGa-CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 112362 0.7 0.84773
Target:  5'- gCGgcGAUCGCGCu-CUGCcgGAcUCGCg -3'
miRNA:   3'- aGCuuCUAGCGCGucGACGa-CU-AGCG- -5'
21690 3' -53.3 NC_004812.1 + 118844 0.74 0.646023
Target:  5'- gUGGAGGcgcUCGCGCAGCUGgUGGUgGa -3'
miRNA:   3'- aGCUUCU---AGCGCGUCGACgACUAgCg -5'
21690 3' -53.3 NC_004812.1 + 11503 0.74 0.625194
Target:  5'- cCGAcGcGUCGCGCAGCUGCaGGUUGa -3'
miRNA:   3'- aGCUuC-UAGCGCGUCGACGaCUAGCg -5'
21690 3' -53.3 NC_004812.1 + 81854 0.75 0.604387
Target:  5'- cUCGggGccgCGCGCgAGCaGCUGcgCGCg -3'
miRNA:   3'- -AGCuuCua-GCGCG-UCGaCGACuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 121540 0.75 0.583666
Target:  5'- gCGAGaucGUCGCGCGGCUGgUGG-CGCg -3'
miRNA:   3'- aGCUUc--UAGCGCGUCGACgACUaGCG- -5'
21690 3' -53.3 NC_004812.1 + 105169 0.78 0.427102
Target:  5'- gCGggGGUCGCGU-GCgGCUGGUgGCg -3'
miRNA:   3'- aGCuuCUAGCGCGuCGaCGACUAgCG- -5'
21690 3' -53.3 NC_004812.1 + 130703 0.66 0.975603
Target:  5'- gCGAcGcgCGCccGCGGC-GCUGggCGCg -3'
miRNA:   3'- aGCUuCuaGCG--CGUCGaCGACuaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.