miRNA display CGI


Results 101 - 120 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 3' -53.3 NC_004812.1 + 83053 0.74 0.656424
Target:  5'- cCGGAGGUC-CGCGuGCUGCccgcGGUCGCu -3'
miRNA:   3'- aGCUUCUAGcGCGU-CGACGa---CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 5846 0.74 0.656424
Target:  5'- cUCGAGGAaC-CGCGGCUGCcgucuacacGAUCGCg -3'
miRNA:   3'- -AGCUUCUaGcGCGUCGACGa--------CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 126627 0.74 0.652265
Target:  5'- aUCGAGGG-CGacggcagccuccgGCAGCUGCUGuUCGCg -3'
miRNA:   3'- -AGCUUCUaGCg------------CGUCGACGACuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 118844 0.74 0.646023
Target:  5'- gUGGAGGcgcUCGCGCAGCUGgUGGUgGa -3'
miRNA:   3'- aGCUUCU---AGCGCGUCGACgACUAgCg -5'
21690 3' -53.3 NC_004812.1 + 11503 0.74 0.625194
Target:  5'- cCGAcGcGUCGCGCAGCUGCaGGUUGa -3'
miRNA:   3'- aGCUuC-UAGCGCGUCGACGaCUAGCg -5'
21690 3' -53.3 NC_004812.1 + 81854 0.75 0.604387
Target:  5'- cUCGggGccgCGCGCgAGCaGCUGcgCGCg -3'
miRNA:   3'- -AGCuuCua-GCGCG-UCGaCGACuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 121540 0.75 0.583666
Target:  5'- gCGAGaucGUCGCGCGGCUGgUGG-CGCg -3'
miRNA:   3'- aGCUUc--UAGCGCGUCGACgACUaGCG- -5'
21690 3' -53.3 NC_004812.1 + 105169 0.78 0.427102
Target:  5'- gCGggGGUCGCGU-GCgGCUGGUgGCg -3'
miRNA:   3'- aGCuuCUAGCGCGuCGaCGACUAgCG- -5'
21690 3' -53.3 NC_004812.1 + 38527 0.74 0.666805
Target:  5'- cCGGAGA-CGCGCGGCgGCcggGGUCGg -3'
miRNA:   3'- aGCUUCUaGCGCGUCGaCGa--CUAGCg -5'
21690 3' -53.3 NC_004812.1 + 38799 0.73 0.687471
Target:  5'- cUCGAGGGUCGCccgcaggugucgGgGGCUGCgGcgCGCg -3'
miRNA:   3'- -AGCUUCUAGCG------------CgUCGACGaCuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 52246 0.73 0.697738
Target:  5'- -gGGAGGUgCGgGCGGCUgGUUGGUUGCg -3'
miRNA:   3'- agCUUCUA-GCgCGUCGA-CGACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 121311 0.71 0.822509
Target:  5'- gCGguGAUCGCGCGGgUGCUGcccacccggcUCGUg -3'
miRNA:   3'- aGCuuCUAGCGCGUCgACGACu---------AGCG- -5'
21690 3' -53.3 NC_004812.1 + 110368 0.71 0.799339
Target:  5'- aUCGAGGAcacgaucuUCGCGCucuucugcgcccccgAGCUGCUGGaCGg -3'
miRNA:   3'- -AGCUUCU--------AGCGCG---------------UCGACGACUaGCg -5'
21690 3' -53.3 NC_004812.1 + 80309 0.72 0.777008
Target:  5'- aCGgcGAcCGCGCcgcGCUGCUGGagGCg -3'
miRNA:   3'- aGCuuCUaGCGCGu--CGACGACUagCG- -5'
21690 3' -53.3 NC_004812.1 + 45621 0.72 0.767468
Target:  5'- cUGgcGGUCGCGCGGCUGUUc--CGCc -3'
miRNA:   3'- aGCuuCUAGCGCGUCGACGAcuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 3455 0.72 0.767468
Target:  5'- gCGggGGUCGgGCccGGCggGC-GGUCGCg -3'
miRNA:   3'- aGCuuCUAGCgCG--UCGa-CGaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 59966 0.72 0.757803
Target:  5'- aCGggG-UCGCGCGGCgccgGCUcGUgGCg -3'
miRNA:   3'- aGCuuCuAGCGCGUCGa---CGAcUAgCG- -5'
21690 3' -53.3 NC_004812.1 + 67554 0.72 0.728157
Target:  5'- gUCGGcgcagAGGUCGaucaGCAGCUcCUGGUCGUa -3'
miRNA:   3'- -AGCU-----UCUAGCg---CGUCGAcGACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 74856 0.73 0.712013
Target:  5'- gCGGAGAacaUCGaGCAGCUGCUccgcgagcugcacgcGAUCGUg -3'
miRNA:   3'- aGCUUCU---AGCgCGUCGACGA---------------CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 80892 0.73 0.707948
Target:  5'- aCGGAGccgcUgGCGCGGCUGCUG--CGCa -3'
miRNA:   3'- aGCUUCu---AgCGCGUCGACGACuaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.