miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 3' -53.3 NC_004812.1 + 145447 0.69 0.899205
Target:  5'- gCGAuGAcCGCGCGGa-GCUGcUCGCg -3'
miRNA:   3'- aGCUuCUaGCGCGUCgaCGACuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 49912 0.68 0.917759
Target:  5'- -------aCGCGCAGCgacgGCUgGAUCGCc -3'
miRNA:   3'- agcuucuaGCGCGUCGa---CGA-CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 52246 0.73 0.697738
Target:  5'- -gGGAGGUgCGgGCGGCUgGUUGGUUGCg -3'
miRNA:   3'- agCUUCUA-GCgCGUCGA-CGACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 67554 0.72 0.728157
Target:  5'- gUCGGcgcagAGGUCGaucaGCAGCUcCUGGUCGUa -3'
miRNA:   3'- -AGCU-----UCUAGCg---CGUCGAcGACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 80309 0.72 0.777008
Target:  5'- aCGgcGAcCGCGCcgcGCUGCUGGagGCg -3'
miRNA:   3'- aGCuuCUaGCGCGu--CGACGACUagCG- -5'
21690 3' -53.3 NC_004812.1 + 61547 0.7 0.831106
Target:  5'- gCGgcGGUCGCGUAGCcGCUcg-CGCc -3'
miRNA:   3'- aGCuuCUAGCGCGUCGaCGAcuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 115019 0.7 0.855742
Target:  5'- gUCGAGGAacacuUCGUGCucgcccacgGGCUGCacGUCGCu -3'
miRNA:   3'- -AGCUUCU-----AGCGCG---------UCGACGacUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 100289 0.69 0.871131
Target:  5'- cUCGGAGGcggCGCGCGcGCgcgcGCUGcgCGUg -3'
miRNA:   3'- -AGCUUCUa--GCGCGU-CGa---CGACuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 56796 0.69 0.892537
Target:  5'- cCGgcGccguUCGCGCGGCgcaGCUGGcggCGCg -3'
miRNA:   3'- aGCuuCu---AGCGCGUCGa--CGACUa--GCG- -5'
21690 3' -53.3 NC_004812.1 + 103333 0.69 0.892537
Target:  5'- gUCGAGu-UCGCGCGGCUGCaGuucaCGUa -3'
miRNA:   3'- -AGCUUcuAGCGCGUCGACGaCua--GCG- -5'
21690 3' -53.3 NC_004812.1 + 44485 0.66 0.975603
Target:  5'- gUCGAAGAU-GCGCcGCUGgaucucCUGcUCGUa -3'
miRNA:   3'- -AGCUUCUAgCGCGuCGAC------GACuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 3924 0.66 0.972939
Target:  5'- gCGggGc-CGCGCGGCgGCggcacgGcgCGCg -3'
miRNA:   3'- aGCuuCuaGCGCGUCGaCGa-----CuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 93821 0.68 0.92566
Target:  5'- cCGggGAcUCGCGCAgggccgcggccauccGCUcGCagaGGUCGCg -3'
miRNA:   3'- aGCuuCU-AGCGCGU---------------CGA-CGa--CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 100539 0.68 0.936106
Target:  5'- aCGGAGcUCGCGCGGCgcgaGCUccggcacgagacggcGGUgGCg -3'
miRNA:   3'- aGCUUCuAGCGCGUCGa---CGA---------------CUAgCG- -5'
21690 3' -53.3 NC_004812.1 + 115757 0.67 0.952436
Target:  5'- -gGAGGGUCGgGCGGCacucGCUc-UCGCa -3'
miRNA:   3'- agCUUCUAGCgCGUCGa---CGAcuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 124683 0.67 0.952436
Target:  5'- cCGggGAgCGaGCGGCcGC-GGUCGCu -3'
miRNA:   3'- aGCuuCUaGCgCGUCGaCGaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 86745 0.66 0.959805
Target:  5'- cCGggGGUCcgcgucggccaugGCGCAGCgGCgacgcGggCGCg -3'
miRNA:   3'- aGCuuCUAG-------------CGCGUCGaCGa----CuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 125199 0.66 0.96017
Target:  5'- -gGGAGGUgGCGCGGCgccUGCcGGUCcuGCu -3'
miRNA:   3'- agCUUCUAgCGCGUCG---ACGaCUAG--CG- -5'
21690 3' -53.3 NC_004812.1 + 137269 0.66 0.966989
Target:  5'- cCGAGGGguucUCG-GCcccGGC-GCUGAUCGCc -3'
miRNA:   3'- aGCUUCU----AGCgCG---UCGaCGACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 144071 0.66 0.970069
Target:  5'- cCGggGGccUgGCGgAGCUGCUGGagGa -3'
miRNA:   3'- aGCuuCU--AgCGCgUCGACGACUagCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.