miRNA display CGI


Results 81 - 100 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 3' -53.3 NC_004812.1 + 29334 0.68 0.923452
Target:  5'- gUCGgcGcGggGCGCGGCUGCgaggGggCGCg -3'
miRNA:   3'- -AGCuuC-UagCGCGUCGACGa---CuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 121133 0.66 0.959805
Target:  5'- cUCGggGAucUCGCGCGccgacgccgcggcGCUGCag--CGCu -3'
miRNA:   3'- -AGCuuCU--AGCGCGU-------------CGACGacuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 30602 0.67 0.952436
Target:  5'- cCGggGGUCGgGCGGCgg--GAcCGCc -3'
miRNA:   3'- aGCuuCUAGCgCGUCGacgaCUaGCG- -5'
21690 3' -53.3 NC_004812.1 + 44175 0.75 0.614784
Target:  5'- aUCGAGGGUgUGCGCGGC-GCUGGggGCc -3'
miRNA:   3'- -AGCUUCUA-GCGCGUCGaCGACUagCG- -5'
21690 3' -53.3 NC_004812.1 + 156058 0.67 0.952436
Target:  5'- gCGGGcGUCGCGCGGC-GC--GUCGCc -3'
miRNA:   3'- aGCUUcUAGCGCGUCGaCGacUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 64149 0.67 0.95642
Target:  5'- aUCGggGAcggCgGCGCGGCggGCUccgCGCg -3'
miRNA:   3'- -AGCuuCUa--G-CGCGUCGa-CGAcuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 7898 0.73 0.687471
Target:  5'- cUCGAGGGUCGCccgcaggugucgGgGGCUGCgGcgCGCg -3'
miRNA:   3'- -AGCUUCUAGCG------------CgUCGACGaCuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 78714 0.67 0.95642
Target:  5'- gUCGggGGUCgGC-CGGCUGg-GGUCGg -3'
miRNA:   3'- -AGCuuCUAG-CGcGUCGACgaCUAGCg -5'
21690 3' -53.3 NC_004812.1 + 96169 0.69 0.871131
Target:  5'- uUCGAGGG-CG-GCGGCgaGgUGGUCGCg -3'
miRNA:   3'- -AGCUUCUaGCgCGUCGa-CgACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 55510 0.7 0.858889
Target:  5'- gCGAAGGUCGCcgGCAGCaccucgccguggacGCUGAccCGCa -3'
miRNA:   3'- aGCUUCUAGCG--CGUCGa-------------CGACUa-GCG- -5'
21690 3' -53.3 NC_004812.1 + 113232 0.7 0.855742
Target:  5'- cUCGGAG--CGCGCGGCcGCgGAgCGCg -3'
miRNA:   3'- -AGCUUCuaGCGCGUCGaCGaCUaGCG- -5'
21690 3' -53.3 NC_004812.1 + 112362 0.7 0.84773
Target:  5'- gCGgcGAUCGCGCu-CUGCcgGAcUCGCg -3'
miRNA:   3'- aGCuuCUAGCGCGucGACGa-CU-AGCG- -5'
21690 3' -53.3 NC_004812.1 + 136424 0.66 0.96017
Target:  5'- cUCGAAGA-CGCGCccGCUcGCccgGGUCGg -3'
miRNA:   3'- -AGCUUCUaGCGCGu-CGA-CGa--CUAGCg -5'
21690 3' -53.3 NC_004812.1 + 128227 0.66 0.96017
Target:  5'- cCGGAGGccagcacgGCGCGGC-GCaGGUCGCg -3'
miRNA:   3'- aGCUUCUag------CGCGUCGaCGaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 52653 0.7 0.855742
Target:  5'- gCGAAGcggaGCGCGuGgaGCUGGUUGCg -3'
miRNA:   3'- aGCUUCuag-CGCGU-CgaCGACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 122864 0.66 0.96017
Target:  5'- cUCGgcG-UCGCGCcGCgUGCgggGGUCGUu -3'
miRNA:   3'- -AGCuuCuAGCGCGuCG-ACGa--CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 54766 0.66 0.96017
Target:  5'- gCGgcGcgCGgGCGGCUacgggggcgGCUGGUCGg -3'
miRNA:   3'- aGCuuCuaGCgCGUCGA---------CGACUAGCg -5'
21690 3' -53.3 NC_004812.1 + 83120 0.66 0.96017
Target:  5'- -aGAAGAgcgUUGCcCAGUUGCUGGccCGCg -3'
miRNA:   3'- agCUUCU---AGCGcGUCGACGACUa-GCG- -5'
21690 3' -53.3 NC_004812.1 + 128729 0.67 0.95642
Target:  5'- cCGAGG--CGCGCGGCgGCcGAaggCGCg -3'
miRNA:   3'- aGCUUCuaGCGCGUCGaCGaCUa--GCG- -5'
21690 3' -53.3 NC_004812.1 + 78792 0.67 0.95642
Target:  5'- gUCGggGGUCgGC-CGGCUGg-GGUCGg -3'
miRNA:   3'- -AGCuuCUAG-CGcGUCGACgaCUAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.