miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 129636 0.66 0.467947
Target:  5'- aGCGCGCcgagUUCgCgGGGcGCCCCCUGGg -3'
miRNA:   3'- -UGCGCG----AGGgGaCCCaCGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 20503 0.66 0.467947
Target:  5'- gGCG-GCagagCCCCUGGGca-CCCCCGuCg -3'
miRNA:   3'- -UGCgCGa---GGGGACCCacgGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 7984 0.66 0.467947
Target:  5'- gGCGCGCgggCgCCggucagggGGGcGCUCCCgCGACc -3'
miRNA:   3'- -UGCGCGa--GgGGa-------CCCaCGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 140102 0.66 0.467947
Target:  5'- -aGCGCaucgCCCCcGc--GCCCCCCGGCc -3'
miRNA:   3'- ugCGCGa---GGGGaCccaCGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 31059 0.66 0.46533
Target:  5'- aACGCGCccCCCCgaacgaacccccGCCCCCCGAa -3'
miRNA:   3'- -UGCGCGa-GGGGaccca-------CGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 156568 0.66 0.46533
Target:  5'- aACGCGCccCCCCgaacgaacccccGCCCCCCGAa -3'
miRNA:   3'- -UGCGCGa-GGGGaccca-------CGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 158 0.66 0.46533
Target:  5'- aACGCGCccCCCCgaacgaacccccGCCCCCCGAa -3'
miRNA:   3'- -UGCGCGa-GGGGaccca-------CGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 122379 0.66 0.459254
Target:  5'- gGCGCgGCggCCCCUcGGGccccUCCCCUGGCu -3'
miRNA:   3'- -UGCG-CGa-GGGGA-CCCac--GGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 153280 0.66 0.459254
Target:  5'- gGCGCgGCggCCCCUcGGGccccUCCCCUGGCu -3'
miRNA:   3'- -UGCG-CGa-GGGGA-CCCac--GGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 125122 0.66 0.459254
Target:  5'- aGC-CGCcCUCCaGGGgGCCCCCCG-Ca -3'
miRNA:   3'- -UGcGCGaGGGGaCCCaCGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 36814 0.66 0.459254
Target:  5'- cCGgGCggcaggcagaCCCCgGGGcagGCCCCCgGGCa -3'
miRNA:   3'- uGCgCGa---------GGGGaCCCa--CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 83551 0.66 0.459254
Target:  5'- aGCGCGgUCUCCgGGaggccGUGCgCCCCGuGCa -3'
miRNA:   3'- -UGCGCgAGGGGaCC-----CACGgGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 5913 0.66 0.459254
Target:  5'- cCGgGCggcaggcagaCCCCgGGGcagGCCCCCgGGCa -3'
miRNA:   3'- uGCgCGa---------GGGGaCCCa--CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 103536 0.66 0.459254
Target:  5'- gGC-CGuCUCCaCCUGcGUGCccgugaCCCCCGACa -3'
miRNA:   3'- -UGcGC-GAGG-GGACcCACG------GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 143552 0.66 0.45408
Target:  5'- cGCGaGCUCCUgucgCUGGGggcgaccggggccgGCCCCgCGACc -3'
miRNA:   3'- -UGCgCGAGGG----GACCCa-------------CGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 4567 0.66 0.450648
Target:  5'- uCGCGCcaCCCUUGGacccccggGCCCgCCGACc -3'
miRNA:   3'- uGCGCGa-GGGGACCca------CGGGgGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 60090 0.66 0.450648
Target:  5'- cGCGgGCgagCCCC-GGGUGCCCggggcagggUCCGcCg -3'
miRNA:   3'- -UGCgCGa--GGGGaCCCACGGG---------GGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 26953 0.66 0.450648
Target:  5'- cCGCGCagcgCCgCCUGGcGgccGCCCUcuCCGACg -3'
miRNA:   3'- uGCGCGa---GG-GGACC-Ca--CGGGG--GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 35468 0.66 0.450648
Target:  5'- uCGCGCcaCCCUUGGacccccggGCCCgCCGACc -3'
miRNA:   3'- uGCGCGa-GGGGACCca------CGGGgGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 152462 0.66 0.450648
Target:  5'- cCGCGCagcgCCgCCUGGcGgccGCCCUcuCCGACg -3'
miRNA:   3'- uGCGCGa---GG-GGACC-Ca--CGGGG--GGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.