miRNA display CGI


Results 41 - 60 of 197 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 4567 0.66 0.450648
Target:  5'- uCGCGCcaCCCUUGGacccccggGCCCgCCGACc -3'
miRNA:   3'- uGCGCGa-GGGGACCca------CGGGgGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 131068 0.66 0.445527
Target:  5'- uCGgGCUCCUCgGGGUccggcguucgcggcgGCCCgUCGGCg -3'
miRNA:   3'- uGCgCGAGGGGaCCCA---------------CGGGgGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 151766 0.66 0.442131
Target:  5'- cCGCGCcgCCgCgGGccGUGCCCCUgGACg -3'
miRNA:   3'- uGCGCGa-GGgGaCC--CACGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 106238 0.66 0.442131
Target:  5'- cACGCGC-CCCCggcgucggGGGcGCCCUaCCG-Cg -3'
miRNA:   3'- -UGCGCGaGGGGa-------CCCaCGGGG-GGCuG- -5'
21690 5' -66.5 NC_004812.1 + 126530 0.66 0.433706
Target:  5'- cCGCGC-CCCCgcgaGGGcccgGCCgCCCGcGCg -3'
miRNA:   3'- uGCGCGaGGGGa---CCCa---CGGgGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 23513 0.66 0.433706
Target:  5'- uACGUGCgggugCUgCUGGG-GCCCCacguCGGCg -3'
miRNA:   3'- -UGCGCGa----GGgGACCCaCGGGGg---GCUG- -5'
21690 5' -66.5 NC_004812.1 + 151477 0.66 0.425375
Target:  5'- gACGcCGCcgUCCCC-GGGcgGCCCCgaugaCGACg -3'
miRNA:   3'- -UGC-GCG--AGGGGaCCCa-CGGGGg----GCUG- -5'
21690 5' -66.5 NC_004812.1 + 120107 0.66 0.417139
Target:  5'- cCG-GC-CCCCUGGGggaccccGCCCCCCccguGGCc -3'
miRNA:   3'- uGCgCGaGGGGACCCa------CGGGGGG----CUG- -5'
21690 5' -66.5 NC_004812.1 + 25968 0.66 0.425375
Target:  5'- gACGcCGCcgUCCCC-GGGcgGCCCCgaugaCGACg -3'
miRNA:   3'- -UGC-GCG--AGGGGaCCCa-CGGGGg----GCUG- -5'
21690 5' -66.5 NC_004812.1 + 81182 0.67 0.377467
Target:  5'- cACGUGCUCCCCcgccagcagccUGGacgcgcgggcGUGgaugCCCCCGGCg -3'
miRNA:   3'- -UGCGCGAGGGG-----------ACC----------CACg---GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 94193 0.67 0.377467
Target:  5'- gACGCGCgagacgagucUCCCCUgccGGGUcuGCUCCucgCCGGCg -3'
miRNA:   3'- -UGCGCG----------AGGGGA---CCCA--CGGGG---GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 26029 0.67 0.377467
Target:  5'- -gGgGCUCCacguCCaGGG-GCCCCCgGACg -3'
miRNA:   3'- ugCgCGAGG----GGaCCCaCGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 60258 0.67 0.384418
Target:  5'- -gGCGCUcgaagccCCCCUGGGccGCCuUUCCGGCc -3'
miRNA:   3'- ugCGCGA-------GGGGACCCa-CGG-GGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 151888 0.67 0.3767
Target:  5'- cGCGUGCUCUacggcggCCUGGGcgacaGCCgCCCGGg -3'
miRNA:   3'- -UGCGCGAGG-------GGACCCa----CGGgGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 130828 0.67 0.369843
Target:  5'- aGCGCGUcgUCCgCCgGGGcGCCgCCCGGg -3'
miRNA:   3'- -UGCGCG--AGG-GGaCCCaCGGgGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 127376 0.67 0.409003
Target:  5'- aACGUGCUCaCCUgcucGGcGUGgUCCCCGAg -3'
miRNA:   3'- -UGCGCGAG-GGGa---CC-CACgGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 3495 0.67 0.400965
Target:  5'- cCGCGCccgCCCCcGGGgcgGCgCCCaGACa -3'
miRNA:   3'- uGCGCGa--GGGGaCCCa--CGgGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 151610 0.67 0.409003
Target:  5'- cCGCccccGCcCgCCCUGcGGcgcacgGCCCCCCGGCg -3'
miRNA:   3'- uGCG----CGaG-GGGAC-CCa-----CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 120709 0.67 0.409003
Target:  5'- cCGCccccGCcCgCCCUGcGGcgcacgGCCCCCCGGCg -3'
miRNA:   3'- uGCG----CGaG-GGGAC-CCa-----CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 23644 0.67 0.409003
Target:  5'- cGCGCGgUCCCCgcggaggcgagGGGcgGCgUCCCCGGu -3'
miRNA:   3'- -UGCGCgAGGGGa----------CCCa-CG-GGGGGCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.