miRNA display CGI


Results 61 - 80 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 60258 0.67 0.384418
Target:  5'- -gGCGCUcgaagccCCCCUGGGccGCCuUUCCGGCc -3'
miRNA:   3'- ugCGCGA-------GGGGACCCa-CGG-GGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 151610 0.67 0.409003
Target:  5'- cCGCccccGCcCgCCCUGcGGcgcacgGCCCCCCGGCg -3'
miRNA:   3'- uGCG----CGaG-GGGAC-CCa-----CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 74705 0.67 0.409003
Target:  5'- uCGCGUUCgCCCUgcGGGUGCUggCCUgGGCc -3'
miRNA:   3'- uGCGCGAG-GGGA--CCCACGG--GGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 127376 0.67 0.409003
Target:  5'- aACGUGCUCaCCUgcucGGcGUGgUCCCCGAg -3'
miRNA:   3'- -UGCGCGAG-GGGa---CC-CACgGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 2113 0.67 0.404168
Target:  5'- cCGCGCUCCCagucccagucccaguCcGGGgagGCCCCgCgGGCg -3'
miRNA:   3'- uGCGCGAGGG---------------GaCCCa--CGGGG-GgCUG- -5'
21690 5' -66.5 NC_004812.1 + 111641 0.67 0.400965
Target:  5'- cGCGgGC-CUCCUGcGcGCCCCCuCGGCg -3'
miRNA:   3'- -UGCgCGaGGGGACcCaCGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 82381 0.67 0.400965
Target:  5'- gGCGCGCggagaCCC-GGG-GCCCCUgGAg -3'
miRNA:   3'- -UGCGCGag---GGGaCCCaCGGGGGgCUg -5'
21690 5' -66.5 NC_004812.1 + 5320 0.67 0.369843
Target:  5'- aGCGCGUcgUCCgCCgGGGcGCCgCCCGGg -3'
miRNA:   3'- -UGCGCG--AGG-GGaCCCaCGGgGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 54873 0.67 0.362324
Target:  5'- gGCGgGCacgggggaCCCaGGGcccGCCCCCCGGCc -3'
miRNA:   3'- -UGCgCGag------GGGaCCCa--CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 127658 0.67 0.362324
Target:  5'- uACGCGUUgCgCUGGGgcacgacGUCCCCgGGCg -3'
miRNA:   3'- -UGCGCGAgGgGACCCa------CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 34396 0.67 0.400965
Target:  5'- cCGCGCccgCCCCcGGGgcgGCgCCCaGACa -3'
miRNA:   3'- uGCGCGa--GGGGaCCCa--CGgGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 56738 0.67 0.400965
Target:  5'- -gGCGCggCCgUGGGgGCCCUgCGGCa -3'
miRNA:   3'- ugCGCGagGGgACCCaCGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 94193 0.67 0.377467
Target:  5'- gACGCGCgagacgagucUCCCCUgccGGGUcuGCUCCucgCCGGCg -3'
miRNA:   3'- -UGCGCG----------AGGGGA---CCCA--CGGGG---GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 81182 0.67 0.377467
Target:  5'- cACGUGCUCCCCcgccagcagccUGGacgcgcgggcGUGgaugCCCCCGGCg -3'
miRNA:   3'- -UGCGCGAGGGG-----------ACC----------CACg---GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 26029 0.67 0.377467
Target:  5'- -gGgGCUCCacguCCaGGG-GCCCCCgGACg -3'
miRNA:   3'- ugCgCGAGG----GGaCCCaCGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 151888 0.67 0.3767
Target:  5'- cGCGUGCUCUacggcggCCUGGGcgacaGCCgCCCGGg -3'
miRNA:   3'- -UGCGCGAGG-------GGACCCa----CGGgGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 130828 0.67 0.369843
Target:  5'- aGCGCGUcgUCCgCCgGGGcGCCgCCCGGg -3'
miRNA:   3'- -UGCGCG--AGG-GGaCCCaCGGgGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 115131 0.67 0.369843
Target:  5'- gGCGCGacgaCUCCCUgacgaGGGcgGCCCUgCGGCa -3'
miRNA:   3'- -UGCGC----GAGGGGa----CCCa-CGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 20159 0.67 0.362324
Target:  5'- cCGCGCggauUCgCCUGcGGUGCCgCCgGGCc -3'
miRNA:   3'- uGCGCG----AGgGGAC-CCACGGgGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 52642 0.67 0.385196
Target:  5'- cCGCaGCcCCCCguuccGGU-CCCCCCGGCg -3'
miRNA:   3'- uGCG-CGaGGGGac---CCAcGGGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.