miRNA display CGI


Results 81 - 100 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 115131 0.67 0.369843
Target:  5'- gGCGCGacgaCUCCCUgacgaGGGcgGCCCUgCGGCa -3'
miRNA:   3'- -UGCGC----GAGGGGa----CCCa-CGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 20159 0.67 0.362324
Target:  5'- cCGCGCggauUCgCCUGcGGUGCCgCCgGGCc -3'
miRNA:   3'- uGCGCG----AGgGGAC-CCACGGgGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 94193 0.67 0.377467
Target:  5'- gACGCGCgagacgagucUCCCCUgccGGGUcuGCUCCucgCCGGCg -3'
miRNA:   3'- -UGCGCG----------AGGGGA---CCCA--CGGGG---GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 29318 0.67 0.39303
Target:  5'- aGCGCGCcaccguUUUCCU-GGUGCCCCgCCGcCa -3'
miRNA:   3'- -UGCGCG------AGGGGAcCCACGGGG-GGCuG- -5'
21690 5' -66.5 NC_004812.1 + 60258 0.67 0.384418
Target:  5'- -gGCGCUcgaagccCCCCUGGGccGCCuUUCCGGCc -3'
miRNA:   3'- ugCGCGA-------GGGGACCCa-CGG-GGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 134836 0.67 0.385196
Target:  5'- -gGCGCgCCCCgggGGGUGgCgaCCGACg -3'
miRNA:   3'- ugCGCGaGGGGa--CCCACgGggGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 26029 0.67 0.377467
Target:  5'- -gGgGCUCCacguCCaGGG-GCCCCCgGACg -3'
miRNA:   3'- ugCgCGAGG----GGaCCCaCGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 132102 0.68 0.354913
Target:  5'- cCGCaGC-CCCCgcggcgcgGGG-GCCCCCCGuCc -3'
miRNA:   3'- uGCG-CGaGGGGa-------CCCaCGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 156479 0.68 0.340414
Target:  5'- gGCGgGCUCCC--GGGcggGCUCCCgGGCg -3'
miRNA:   3'- -UGCgCGAGGGgaCCCa--CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 110858 0.68 0.347609
Target:  5'- uCGcCGuCUCCCCUcGGGcuccgcggaGCCCgCCCGGCg -3'
miRNA:   3'- uGC-GC-GAGGGGA-CCCa--------CGGG-GGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 123763 0.68 0.354913
Target:  5'- uGC-CGCUggcCgCCCUGGGggccGCCCCCCGcCc -3'
miRNA:   3'- -UGcGCGA---G-GGGACCCa---CGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 35087 0.68 0.347609
Target:  5'- cACGUGgaCgCCgaGGGcGCCCCCgCGGCg -3'
miRNA:   3'- -UGCGCgaG-GGgaCCCaCGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 192 0.68 0.354913
Target:  5'- cGCGCGCgcgCCgCCgGGGgaggGCCcgggucgcgcagCCCCGGCc -3'
miRNA:   3'- -UGCGCGa--GG-GGaCCCa---CGG------------GGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 136521 0.68 0.347609
Target:  5'- gGCGCGCUCCUCcGaGGcGUCCgCUGGCu -3'
miRNA:   3'- -UGCGCGAGGGGaC-CCaCGGGgGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 63034 0.68 0.353444
Target:  5'- cGCGCGCUuggcCCCCggggaggcgGGGgcgucuggcuccGCCCCCaCGGCc -3'
miRNA:   3'- -UGCGCGA----GGGGa--------CCCa-----------CGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 79680 0.68 0.346885
Target:  5'- uGCGCccGCUCCCCgacuucggggggcUgcGGGUGgCCCCCGcCg -3'
miRNA:   3'- -UGCG--CGAGGGG-------------A--CCCACgGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 15607 0.68 0.354913
Target:  5'- -gGUGUccggggCCCCUGcGUGgCCCCCGGCu -3'
miRNA:   3'- ugCGCGa-----GGGGACcCACgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 125701 0.68 0.354913
Target:  5'- cGCGCGCgcgCCgCCgGGGgaggGCCcgggucgcgcagCCCCGGCc -3'
miRNA:   3'- -UGCGCGa--GG-GGaCCCa---CGG------------GGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 101448 0.68 0.352711
Target:  5'- -aGCGCgUCCCCggUGaGGUGCCaggccagcuccuggCCCUGGCg -3'
miRNA:   3'- ugCGCG-AGGGG--AC-CCACGG--------------GGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 4186 0.68 0.347609
Target:  5'- cACGUGgaCgCCgaGGGcGCCCCCgCGGCg -3'
miRNA:   3'- -UGCGCgaG-GGgaCCCaCGGGGG-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.