miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 148361 0.71 0.224178
Target:  5'- -gGCGC-CCCCgGGGgcgGaCCCCCGGCc -3'
miRNA:   3'- ugCGCGaGGGGaCCCa--CgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 122801 0.71 0.224178
Target:  5'- gGCGgGCUCCCCcGGGcgGUCCaCCCaGAUg -3'
miRNA:   3'- -UGCgCGAGGGGaCCCa-CGGG-GGG-CUG- -5'
21690 5' -66.5 NC_004812.1 + 117460 0.71 0.224178
Target:  5'- -gGCGC-CCCCgGGGgcgGaCCCCCGGCc -3'
miRNA:   3'- ugCGCGaGGGGaCCCa--CgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 32169 0.71 0.219104
Target:  5'- -gGCGC-CCCCgcgcggaccGGGUGCCUCCgGGCc -3'
miRNA:   3'- ugCGCGaGGGGa--------CCCACGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 126452 0.71 0.213636
Target:  5'- cGCGCGCUCCCggCUGuGGagGCCUaggggagCCCGGCg -3'
miRNA:   3'- -UGCGCGAGGG--GAC-CCa-CGGG-------GGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 145024 0.71 0.20925
Target:  5'- cGCGCGgcguccCUCCCCcccGGUGCCCCagCGACg -3'
miRNA:   3'- -UGCGC------GAGGGGac-CCACGGGGg-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 125037 0.71 0.20925
Target:  5'- gACGCGCUCCCCUcgc-GCCgCCCgGGCg -3'
miRNA:   3'- -UGCGCGAGGGGAcccaCGG-GGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 75769 0.71 0.214128
Target:  5'- gGC-CGCUCggcaccaCCacGGUGCCCCCCGACu -3'
miRNA:   3'- -UGcGCGAGg------GGacCCACGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 944 0.71 0.213636
Target:  5'- cGCGCGCUCCCggCUGuGGagGCCUaggggagCCCGGCg -3'
miRNA:   3'- -UGCGCGAGGG--GAC-CCa-CGGG-------GGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 155938 0.71 0.20925
Target:  5'- gACGCGCUCCCCUcgc-GCCgCCCgGGCg -3'
miRNA:   3'- -UGCGCGAGGGGAcccaCGG-GGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 151269 0.7 0.251062
Target:  5'- cCGCGC-CCCCgccgaccccGGGcgGCgCCCCGGCg -3'
miRNA:   3'- uGCGCGaGGGGa--------CCCa-CGgGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 4679 0.7 0.251062
Target:  5'- cGCGCGCcggCgCCgagGGGaGCgCCCCCGGCc -3'
miRNA:   3'- -UGCGCGa--GgGGa--CCCaCG-GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 3149 0.7 0.256747
Target:  5'- cCGCGCUCCCCUcc--GCCCCCCcccGCg -3'
miRNA:   3'- uGCGCGAGGGGAcccaCGGGGGGc--UG- -5'
21690 5' -66.5 NC_004812.1 + 50948 0.7 0.260209
Target:  5'- uACGCGC-CCCaccaccacgccgGGGUGUaCCCCGGCg -3'
miRNA:   3'- -UGCGCGaGGGga----------CCCACGgGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 26271 0.7 0.256747
Target:  5'- gACGCGg-CCgCgcGGGUGCCCCgCGGCg -3'
miRNA:   3'- -UGCGCgaGGgGa-CCCACGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 47641 0.7 0.261954
Target:  5'- cCGC-CUCCCCaccGGGUcccgcgaucccccGCgCCCCCGACa -3'
miRNA:   3'- uGCGcGAGGGGa--CCCA-------------CG-GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 94424 0.7 0.268434
Target:  5'- gACGUccGC-CCCCUGuucgcgGCCCCCCGGCc -3'
miRNA:   3'- -UGCG--CGaGGGGACcca---CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 30891 0.7 0.268434
Target:  5'- aGCGCGCggCCCCgcgccccgcGGGcaCCUCCCGGCa -3'
miRNA:   3'- -UGCGCGa-GGGGa--------CCCacGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 65436 0.7 0.24548
Target:  5'- cCGCGUcCCUCggggagGGGU-CCCCCCGGCc -3'
miRNA:   3'- uGCGCGaGGGGa-----CCCAcGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 48953 0.7 0.24548
Target:  5'- gGCGUGCUgccggccgCCCCcGGcgacGUGCCCCgCGACg -3'
miRNA:   3'- -UGCGCGA--------GGGGaCC----CACGGGGgGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.