Results 61 - 80 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 119701 | 0.69 | 0.286764 |
Target: 5'- cCGCGUcCCCCUuccccucGCCCCCCGGCg -3' miRNA: 3'- uGCGCGaGGGGAccca---CGGGGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 74797 | 0.69 | 0.286764 |
Target: 5'- cACGCGC-CCCC-GcGG-GCCCgCCCGAa -3' miRNA: 3'- -UGCGCGaGGGGaC-CCaCGGG-GGGCUg -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 119704 | 0.69 | 0.286764 |
Target: 5'- gGCGCGCaccgUCCCCcucGU-CCCCCCGACc -3' miRNA: 3'- -UGCGCG----AGGGGaccCAcGGGGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 34312 | 0.69 | 0.280547 |
Target: 5'- cCGC-CUCCCCccGGcgGCCCUCCGGCg -3' miRNA: 3'- uGCGcGAGGGGacCCa-CGGGGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 83216 | 0.69 | 0.312718 |
Target: 5'- cCGCGCUCgggggCCUcGGUgGCCCCCgGGCg -3' miRNA: 3'- uGCGCGAGg----GGAcCCA-CGGGGGgCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 69219 | 0.69 | 0.274437 |
Target: 5'- uCGCGC-CCCCacGGG-GCCCCCgGGg -3' miRNA: 3'- uGCGCGaGGGGa-CCCaCGGGGGgCUg -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 2964 | 0.69 | 0.274437 |
Target: 5'- uGCGCGCccucUCCCCgcccgcccgcaUGGGcgGCCCgucaCCGACa -3' miRNA: 3'- -UGCGCG----AGGGG-----------ACCCa-CGGGg---GGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 94462 | 0.69 | 0.274437 |
Target: 5'- cCuCGUUUCCCUGGGcGCCCUcgCCGGCg -3' miRNA: 3'- uGcGCGAGGGGACCCaCGGGG--GGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 150657 | 0.69 | 0.312718 |
Target: 5'- cCGCGgcCUCCCC-GGGcccUGCCCCCUGuGCc -3' miRNA: 3'- uGCGC--GAGGGGaCCC---ACGGGGGGC-UG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 151170 | 0.69 | 0.306066 |
Target: 5'- gGCGCgaguccucuuccGCcCCUCUGGGgGgCCCCCGGCc -3' miRNA: 3'- -UGCG------------CGaGGGGACCCaCgGGGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 151053 | 0.69 | 0.306066 |
Target: 5'- gGCGCgaguccuccuccGCcCCUCUGGGgGgCCCCCGGCc -3' miRNA: 3'- -UGCG------------CGaGGGGACCCaCgGGGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 121300 | 0.69 | 0.303436 |
Target: 5'- -gGCGCuUCCCCgcggugaucgcgcGGGUgcuGCCCaCCCGGCu -3' miRNA: 3'- ugCGCG-AGGGGa------------CCCA---CGGG-GGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 112274 | 0.69 | 0.299524 |
Target: 5'- cGCGCGC-CgCUCUGGGccgcGCCCgCCCGGg -3' miRNA: 3'- -UGCGCGaG-GGGACCCa---CGGG-GGGCUg -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 33865 | 0.69 | 0.312718 |
Target: 5'- uGCGCGCccucUCCCCgcccgcccgcaUGGGccgGCCCgucaCCGACa -3' miRNA: 3'- -UGCGCG----AGGGG-----------ACCCa--CGGGg---GGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 77559 | 0.69 | 0.280547 |
Target: 5'- aACGCGUccggCCgCUGGGccgcGgCCCCCGACc -3' miRNA: 3'- -UGCGCGa---GGgGACCCa---CgGGGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 84748 | 0.69 | 0.283021 |
Target: 5'- cGCGCGCUCCUgCaGGGgaucgugcgggcggGCCgCCCGGCc -3' miRNA: 3'- -UGCGCGAGGG-GaCCCa-------------CGGgGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 3441 | 0.68 | 0.319478 |
Target: 5'- cCGCGCcCCCCgUGGuccccgugGCCCCCCGcccGCg -3' miRNA: 3'- uGCGCGaGGGG-ACCca------CGGGGGGC---UG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 4186 | 0.68 | 0.347609 |
Target: 5'- cACGUGgaCgCCgaGGGcGCCCCCgCGGCg -3' miRNA: 3'- -UGCGCgaG-GGgaCCCaCGGGGG-GCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 125701 | 0.68 | 0.354913 |
Target: 5'- cGCGCGCgcgCCgCCgGGGgaggGCCcgggucgcgcagCCCCGGCc -3' miRNA: 3'- -UGCGCGa--GG-GGaCCCa---CGG------------GGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 136521 | 0.68 | 0.347609 |
Target: 5'- gGCGCGCUCCUCcGaGGcGUCCgCUGGCu -3' miRNA: 3'- -UGCGCGAGGGGaC-CCaCGGGgGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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