miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 106915 1.08 0.00039
Target:  5'- gACGCGCUCCCCUGGGUGCCCCCCGACa -3'
miRNA:   3'- -UGCGCGAGGGGACCCACGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 8159 0.81 0.044556
Target:  5'- cGCGCGCUCaCCUGGG-GCCCCCCa-- -3'
miRNA:   3'- -UGCGCGAGgGGACCCaCGGGGGGcug -5'
21690 5' -66.5 NC_004812.1 + 39060 0.81 0.044556
Target:  5'- cGCGCGCUCaCCUGGG-GCCCCCCa-- -3'
miRNA:   3'- -UGCGCGAGgGGACCCaCGGGGGGcug -5'
21690 5' -66.5 NC_004812.1 + 50027 0.76 0.09238
Target:  5'- -gGCGCUCCCCcccGcGG-GCCCCCUGGCg -3'
miRNA:   3'- ugCGCGAGGGGa--C-CCaCGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 8951 0.76 0.103752
Target:  5'- gACGCGCUCCCCUcGGGagguucacgaaucgUGCgCCCaCUGGCg -3'
miRNA:   3'- -UGCGCGAGGGGA-CCC--------------ACG-GGG-GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 78820 0.75 0.109786
Target:  5'- gGCGCaGCgggCCCCUGaccgugcggcGGUGUCCCCCGAg -3'
miRNA:   3'- -UGCG-CGa--GGGGAC----------CCACGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 117699 0.75 0.121069
Target:  5'- cCGCGCcCCCCgGGGUcgcgggagcGCCCCCCuGACc -3'
miRNA:   3'- uGCGCGaGGGGaCCCA---------CGGGGGG-CUG- -5'
21690 5' -66.5 NC_004812.1 + 148600 0.75 0.121069
Target:  5'- cCGCGCcCCCCgGGGUcgcgggagcGCCCCCCuGACc -3'
miRNA:   3'- uGCGCGaGGGGaCCCA---------CGGGGGG-CUG- -5'
21690 5' -66.5 NC_004812.1 + 109766 0.74 0.133422
Target:  5'- cACGCGCgcaaCCCCUGacgGCCCCCuCGACc -3'
miRNA:   3'- -UGCGCGa---GGGGACccaCGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 126072 0.74 0.140026
Target:  5'- cCGCGCg-CCCUGcGccUGCCCCCCGGCg -3'
miRNA:   3'- uGCGCGagGGGACcC--ACGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 1567 0.73 0.146927
Target:  5'- cGCGCGCgagCCgCCcGGGUcCCCCCCGcACg -3'
miRNA:   3'- -UGCGCGa--GG-GGaCCCAcGGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 127075 0.73 0.146927
Target:  5'- cGCGCGCgagCCgCCcGGGUcCCCCCCGcACg -3'
miRNA:   3'- -UGCGCGa--GG-GGaCCCAcGGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 83353 0.73 0.157862
Target:  5'- gACGCGCUgcuggcggcCCgCCUGGGggcgggccGCCCgCCCGACc -3'
miRNA:   3'- -UGCGCGA---------GG-GGACCCa-------CGGG-GGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 55769 0.73 0.169527
Target:  5'- uCGCGCccugCCCCUGGGcaGCCCCgCGGu -3'
miRNA:   3'- uGCGCGa---GGGGACCCa-CGGGGgGCUg -5'
21690 5' -66.5 NC_004812.1 + 119756 0.72 0.181957
Target:  5'- cCGCGcCUCCCC-GGGcccUGCCCCCUGuGCc -3'
miRNA:   3'- uGCGC-GAGGGGaCCC---ACGGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 105052 0.72 0.186276
Target:  5'- gGCGcCGCUCCggCCgcGGGcgcacacugGCCCCCCGGCg -3'
miRNA:   3'- -UGC-GCGAGG--GGa-CCCa--------CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 150321 0.72 0.190685
Target:  5'- gGCGcCGCUcCCCCUGGccGUG-CCCCUGGCc -3'
miRNA:   3'- -UGC-GCGA-GGGGACC--CACgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 119420 0.72 0.190685
Target:  5'- gGCGcCGCUcCCCCUGGccGUG-CCCCUGGCc -3'
miRNA:   3'- -UGC-GCGA-GGGGACC--CACgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 100668 0.72 0.19978
Target:  5'- gACGCGCUCCUCgucgGGGgccagGCCaCCUCGcCa -3'
miRNA:   3'- -UGCGCGAGGGGa---CCCa----CGG-GGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 145024 0.71 0.20925
Target:  5'- cGCGCGgcguccCUCCCCcccGGUGCCCCagCGACg -3'
miRNA:   3'- -UGCGC------GAGGGGac-CCACGGGGg-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.