miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 125737 0.7 0.252756
Target:  5'- cGCGCGCUgagccgcCCCCUcggccccccauggccGGGcgcGCCCCCgGGCg -3'
miRNA:   3'- -UGCGCGA-------GGGGA---------------CCCa--CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 34050 0.7 0.256747
Target:  5'- cCGCGCUCCCCUcc--GCCCCCCcccGCg -3'
miRNA:   3'- uGCGCGAGGGGAcccaCGGGGGGc--UG- -5'
21690 5' -66.5 NC_004812.1 + 26271 0.7 0.256747
Target:  5'- gACGCGg-CCgCgcGGGUGCCCCgCGGCg -3'
miRNA:   3'- -UGCGCgaGGgGa-CCCACGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 3149 0.7 0.256747
Target:  5'- cCGCGCUCCCCUcc--GCCCCCCcccGCg -3'
miRNA:   3'- uGCGCGAGGGGAcccaCGGGGGGc--UG- -5'
21690 5' -66.5 NC_004812.1 + 50948 0.7 0.260209
Target:  5'- uACGCGC-CCCaccaccacgccgGGGUGUaCCCCGGCg -3'
miRNA:   3'- -UGCGCGaGGGga----------CCCACGgGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 47641 0.7 0.261954
Target:  5'- cCGC-CUCCCCaccGGGUcccgcgaucccccGCgCCCCCGACa -3'
miRNA:   3'- uGCGcGAGGGGa--CCCA-------------CG-GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 72857 0.7 0.262538
Target:  5'- gGCGCGCUggcgUCCCUGGcGgcaGCCgggcccgcguCCCCGGCa -3'
miRNA:   3'- -UGCGCGA----GGGGACC-Ca--CGG----------GGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 136844 0.7 0.262538
Target:  5'- gGCGCGCgUCgCCUGGGa--CCCCCGcACc -3'
miRNA:   3'- -UGCGCG-AGgGGACCCacgGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 65521 0.7 0.262538
Target:  5'- -gGCGCgCCCCUGGc-GCCCCCCc-- -3'
miRNA:   3'- ugCGCGaGGGGACCcaCGGGGGGcug -5'
21690 5' -66.5 NC_004812.1 + 94424 0.7 0.268434
Target:  5'- gACGUccGC-CCCCUGuucgcgGCCCCCCGGCc -3'
miRNA:   3'- -UGCG--CGaGGGGACcca---CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 73110 0.7 0.268434
Target:  5'- uCGCGCaCCgCCUGGccGUcgcGCUCCCCGACg -3'
miRNA:   3'- uGCGCGaGG-GGACC--CA---CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 30891 0.7 0.268434
Target:  5'- aGCGCGCggCCCCgcgccccgcGGGcaCCUCCCGGCa -3'
miRNA:   3'- -UGCGCGa-GGGGa--------CCCacGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 69219 0.69 0.274437
Target:  5'- uCGCGC-CCCCacGGG-GCCCCCgGGg -3'
miRNA:   3'- uGCGCGaGGGGa-CCCaCGGGGGgCUg -5'
21690 5' -66.5 NC_004812.1 + 94462 0.69 0.274437
Target:  5'- cCuCGUUUCCCUGGGcGCCCUcgCCGGCg -3'
miRNA:   3'- uGcGCGAGGGGACCCaCGGGG--GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 2964 0.69 0.274437
Target:  5'- uGCGCGCccucUCCCCgcccgcccgcaUGGGcgGCCCgucaCCGACa -3'
miRNA:   3'- -UGCGCG----AGGGG-----------ACCCa-CGGGg---GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 3411 0.69 0.280547
Target:  5'- cCGC-CUCCCCccGGcgGCCCUCCGGCg -3'
miRNA:   3'- uGCGcGAGGGGacCCa-CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 34312 0.69 0.280547
Target:  5'- cCGC-CUCCCCccGGcgGCCCUCCGGCg -3'
miRNA:   3'- uGCGcGAGGGGacCCa-CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 77559 0.69 0.280547
Target:  5'- aACGCGUccggCCgCUGGGccgcGgCCCCCGACc -3'
miRNA:   3'- -UGCGCGa---GGgGACCCa---CgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 84748 0.69 0.283021
Target:  5'- cGCGCGCUCCUgCaGGGgaucgugcgggcggGCCgCCCGGCc -3'
miRNA:   3'- -UGCGCGAGGG-GaCCCa-------------CGGgGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 119701 0.69 0.286764
Target:  5'- cCGCGUcCCCCUuccccucGCCCCCCGGCg -3'
miRNA:   3'- uGCGCGaGGGGAccca---CGGGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.