miRNA display CGI


Results 61 - 80 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 119701 0.69 0.286764
Target:  5'- cCGCGUcCCCCUuccccucGCCCCCCGGCg -3'
miRNA:   3'- uGCGCGaGGGGAccca---CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 74797 0.69 0.286764
Target:  5'- cACGCGC-CCCC-GcGG-GCCCgCCCGAa -3'
miRNA:   3'- -UGCGCGaGGGGaC-CCaCGGG-GGGCUg -5'
21690 5' -66.5 NC_004812.1 + 150602 0.69 0.286764
Target:  5'- cCGCGUcCCCCUuccccucGCCCCCCGGCg -3'
miRNA:   3'- uGCGCGaGGGGAccca---CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 112274 0.69 0.299524
Target:  5'- cGCGCGC-CgCUCUGGGccgcGCCCgCCCGGg -3'
miRNA:   3'- -UGCGCGaG-GGGACCCa---CGGG-GGGCUg -5'
21690 5' -66.5 NC_004812.1 + 121300 0.69 0.303436
Target:  5'- -gGCGCuUCCCCgcggugaucgcgcGGGUgcuGCCCaCCCGGCu -3'
miRNA:   3'- ugCGCG-AGGGGa------------CCCA---CGGG-GGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 151053 0.69 0.306066
Target:  5'- gGCGCgaguccuccuccGCcCCUCUGGGgGgCCCCCGGCc -3'
miRNA:   3'- -UGCG------------CGaGGGGACCCaCgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 120269 0.69 0.306066
Target:  5'- gGCGCgaguccucuuccGCcCCUCUGGGgGgCCCCCGGCc -3'
miRNA:   3'- -UGCG------------CGaGGGGACCCaCgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 16659 0.69 0.306066
Target:  5'- cGCGCGCUCCCg-----GCCCCCCGcCc -3'
miRNA:   3'- -UGCGCGAGGGgacccaCGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 60299 0.69 0.306066
Target:  5'- uCGCGCcccCCCUUGGGgGCCuugCCCUGGCc -3'
miRNA:   3'- uGCGCGa--GGGGACCCaCGG---GGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 46434 0.69 0.306066
Target:  5'- -gGCGCUCCCCUGGGcgcUGgCgCUgGGCc -3'
miRNA:   3'- ugCGCGAGGGGACCC---ACgGgGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 151170 0.69 0.306066
Target:  5'- gGCGCgaguccucuuccGCcCCUCUGGGgGgCCCCCGGCc -3'
miRNA:   3'- -UGCG------------CGaGGGGACCCaCgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 120152 0.69 0.306066
Target:  5'- gGCGCgaguccuccuccGCcCCUCUGGGgGgCCCCCGGCc -3'
miRNA:   3'- -UGCG------------CGaGGGGACCCaCgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 31938 0.69 0.310044
Target:  5'- cGCuCGCUCCCCgGGGccagcgucaggacgUcgcccaggaucucGCCCCCCGGCc -3'
miRNA:   3'- -UGcGCGAGGGGaCCC--------------A-------------CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 83216 0.69 0.312718
Target:  5'- cCGCGCUCgggggCCUcGGUgGCCCCCgGGCg -3'
miRNA:   3'- uGCGCGAGg----GGAcCCA-CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 150657 0.69 0.312718
Target:  5'- cCGCGgcCUCCCC-GGGcccUGCCCCCUGuGCc -3'
miRNA:   3'- uGCGC--GAGGGGaCCC---ACGGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 33865 0.69 0.312718
Target:  5'- uGCGCGCccucUCCCCgcccgcccgcaUGGGccgGCCCgucaCCGACa -3'
miRNA:   3'- -UGCGCG----AGGGG-----------ACCCa--CGGGg---GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 3441 0.68 0.319478
Target:  5'- cCGCGCcCCCCgUGGuccccgugGCCCCCCGcccGCg -3'
miRNA:   3'- uGCGCGaGGGG-ACCca------CGGGGGGC---UG- -5'
21690 5' -66.5 NC_004812.1 + 83908 0.68 0.319478
Target:  5'- uCGaggaGCUCCCgUucGUGUCCCCCGGCg -3'
miRNA:   3'- uGCg---CGAGGGgAccCACGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 29046 0.68 0.319478
Target:  5'- gGCGCGC-CCCCUcccccGcGCCCCCCGcCg -3'
miRNA:   3'- -UGCGCGaGGGGAcc---CaCGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 154555 0.68 0.319478
Target:  5'- gGCGCGC-CCCCUcccccgcGCCCCCCGcCg -3'
miRNA:   3'- -UGCGCGaGGGGAccca---CGGGGGGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.