miRNA display CGI


Results 81 - 100 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 83908 0.68 0.319478
Target:  5'- uCGaggaGCUCCCgUucGUGUCCCCCGGCg -3'
miRNA:   3'- uGCg---CGAGGGgAccCACGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 85436 0.68 0.325656
Target:  5'- uCGCGCUCUacggaauCCUucgcccUGCCCCCCGACg -3'
miRNA:   3'- uGCGCGAGG-------GGAccc---ACGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 144488 0.68 0.326348
Target:  5'- cGCGCGC-CCCCaac---CCCCCCGACg -3'
miRNA:   3'- -UGCGCGaGGGGacccacGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 40756 0.68 0.326348
Target:  5'- -gGCGCgggagCCCCgagcgGGGU-UCCCCUGGCa -3'
miRNA:   3'- ugCGCGa----GGGGa----CCCAcGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 106966 0.68 0.326348
Target:  5'- cGCGCGUaCCCCagGGGcGCCUCCCc-- -3'
miRNA:   3'- -UGCGCGaGGGGa-CCCaCGGGGGGcug -5'
21690 5' -66.5 NC_004812.1 + 119364 0.68 0.329126
Target:  5'- gGCGCGCcugccgcCCCCUGcugccccuccugcccGGgGCCCCCCG-Cg -3'
miRNA:   3'- -UGCGCGa------GGGGAC---------------CCaCGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 150265 0.68 0.329126
Target:  5'- gGCGCGCcugccgcCCCCUGcugccccuccugcccGGgGCCCCCCG-Cg -3'
miRNA:   3'- -UGCGCGa------GGGGAC---------------CCaCGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 151524 0.68 0.333326
Target:  5'- cCGC-CUCCCCggccGGaccccgGCCCCCCGAg -3'
miRNA:   3'- uGCGcGAGGGGa---CCca----CGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 61076 0.68 0.333326
Target:  5'- gGCGCGacgCCCC-GGGccGCCCCgCCGGg -3'
miRNA:   3'- -UGCGCga-GGGGaCCCa-CGGGG-GGCUg -5'
21690 5' -66.5 NC_004812.1 + 120623 0.68 0.333326
Target:  5'- cCGC-CUCCCCggccGGaccccgGCCCCCCGAg -3'
miRNA:   3'- uGCGcGAGGGGa---CCca----CGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 120206 0.68 0.336148
Target:  5'- uGCGCGgcgcccggcguccucCUCCCgUGGGUGacccucgcCCCCCCGu- -3'
miRNA:   3'- -UGCGC---------------GAGGGgACCCAC--------GGGGGGCug -5'
21690 5' -66.5 NC_004812.1 + 151107 0.68 0.336148
Target:  5'- uGCGCGgcgcccggcguccucCUCCCgUGGGUGacccucgcCCCCCCGu- -3'
miRNA:   3'- -UGCGC---------------GAGGGgACCCAC--------GGGGGGCug -5'
21690 5' -66.5 NC_004812.1 + 15128 0.68 0.336148
Target:  5'- aGCGCGCguccggccgcgucgCCUCgGGG-GCUCCCCGcACg -3'
miRNA:   3'- -UGCGCGa-------------GGGGaCCCaCGGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 69 0.68 0.340414
Target:  5'- gGCGgGCUCCC--GGGcggGCUCCCgGGCg -3'
miRNA:   3'- -UGCgCGAGGGgaCCCa--CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 156479 0.68 0.340414
Target:  5'- gGCGgGCUCCC--GGGcggGCUCCCgGGCg -3'
miRNA:   3'- -UGCgCGAGGGgaCCCa--CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 125578 0.68 0.340414
Target:  5'- gGCGgGCUCCC--GGGcggGCUCCCgGGCg -3'
miRNA:   3'- -UGCgCGAGGGgaCCCa--CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 65393 0.68 0.340414
Target:  5'- gACGCGCUCCgcgagCUGGacgccgcGCCCCCCGcCc -3'
miRNA:   3'- -UGCGCGAGGg----GACCca-----CGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 79680 0.68 0.346885
Target:  5'- uGCGCccGCUCCCCgacuucggggggcUgcGGGUGgCCCCCGcCg -3'
miRNA:   3'- -UGCG--CGAGGGG-------------A--CCCACgGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 4186 0.68 0.347609
Target:  5'- cACGUGgaCgCCgaGGGcGCCCCCgCGGCg -3'
miRNA:   3'- -UGCGCgaG-GGgaCCCaCGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 136521 0.68 0.347609
Target:  5'- gGCGCGCUCCUCcGaGGcGUCCgCUGGCu -3'
miRNA:   3'- -UGCGCGAGGGGaC-CCaCGGGgGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.