miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 90949 0.66 0.450648
Target:  5'- -gGCGCUCuCCCgcgGGGcuccgguagggGCUCCaCCGGCu -3'
miRNA:   3'- ugCGCGAG-GGGa--CCCa----------CGGGG-GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 30183 0.66 0.450648
Target:  5'- cGCGCGCggCUgCCUGGGgggcacaGCuCCCCCaGCg -3'
miRNA:   3'- -UGCGCGa-GG-GGACCCa------CG-GGGGGcUG- -5'
21690 5' -66.5 NC_004812.1 + 4567 0.66 0.450648
Target:  5'- uCGCGCcaCCCUUGGacccccggGCCCgCCGACc -3'
miRNA:   3'- uGCGCGa-GGGGACCca------CGGGgGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 5560 0.66 0.445527
Target:  5'- uCGgGCUCCUCgGGGUccggcguucgcggcgGCCCgUCGGCg -3'
miRNA:   3'- uGCgCGAGGGGaCCCA---------------CGGGgGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 131068 0.66 0.445527
Target:  5'- uCGgGCUCCUCgGGGUccggcguucgcggcgGCCCgUCGGCg -3'
miRNA:   3'- uGCgCGAGGGGaCCCA---------------CGGGgGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 84099 0.66 0.442131
Target:  5'- gGCcCGgaCCCCggcGGcGgcgcGCCCCCCGACc -3'
miRNA:   3'- -UGcGCgaGGGGa--CC-Ca---CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 106238 0.66 0.442131
Target:  5'- cACGCGC-CCCCggcgucggGGGcGCCCUaCCG-Cg -3'
miRNA:   3'- -UGCGCGaGGGGa-------CCCaCGGGG-GGCuG- -5'
21690 5' -66.5 NC_004812.1 + 26258 0.66 0.442131
Target:  5'- cCGCGCcgCCgCgGGccGUGCCCCUgGACg -3'
miRNA:   3'- uGCGCGa-GGgGaCC--CACGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 151766 0.66 0.442131
Target:  5'- cCGCGCcgCCgCgGGccGUGCCCCUgGACg -3'
miRNA:   3'- uGCGCGa-GGgGaCC--CACGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 23513 0.66 0.433706
Target:  5'- uACGUGCgggugCUgCUGGG-GCCCCacguCGGCg -3'
miRNA:   3'- -UGCGCGa----GGgGACCCaCGGGGg---GCUG- -5'
21690 5' -66.5 NC_004812.1 + 126530 0.66 0.433706
Target:  5'- cCGCGC-CCCCgcgaGGGcccgGCCgCCCGcGCg -3'
miRNA:   3'- uGCGCGaGGGGa---CCCa---CGGgGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 58060 0.66 0.433706
Target:  5'- aGCGCGUggacUCCCUcGGcGCCCUgCGACg -3'
miRNA:   3'- -UGCGCGa---GGGGAcCCaCGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 1021 0.66 0.433706
Target:  5'- cCGCGC-CCCCgcgaGGGcccgGCCgCCCGcGCg -3'
miRNA:   3'- uGCGCGaGGGGa---CCCa---CGGgGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 86857 0.66 0.433706
Target:  5'- -gGCGCgagCgCaCUGG-UGCCCCCCGGu -3'
miRNA:   3'- ugCGCGa--GgG-GACCcACGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 47328 0.66 0.433706
Target:  5'- gGCGCGCagguaggCCUCUGcGGUcGCgCCCCG-Ca -3'
miRNA:   3'- -UGCGCGa------GGGGAC-CCA-CGgGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 22276 0.66 0.432868
Target:  5'- gGCGCGCgUCUuucggagCgaGGGUGaCCCUCUGGCg -3'
miRNA:   3'- -UGCGCG-AGG-------GgaCCCAC-GGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 80235 0.66 0.425375
Target:  5'- cGCGCGCcucggCgCCCUGGGggcggcgGCCgcggaCCUGGCg -3'
miRNA:   3'- -UGCGCGa----G-GGGACCCa------CGGg----GGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 25968 0.66 0.425375
Target:  5'- gACGcCGCcgUCCCC-GGGcgGCCCCgaugaCGACg -3'
miRNA:   3'- -UGC-GCG--AGGGGaCCCa-CGGGGg----GCUG- -5'
21690 5' -66.5 NC_004812.1 + 83777 0.66 0.425375
Target:  5'- cCGCGCggCCgCUcgcgGGGaGCCCCCCGuGCc -3'
miRNA:   3'- uGCGCGa-GGgGA----CCCaCGGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 51374 0.66 0.425375
Target:  5'- gACGCGUcgCCCgCccGGGUGUCCUUCGAa -3'
miRNA:   3'- -UGCGCGa-GGG-Ga-CCCACGGGGGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.