miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 43245 0.66 0.425375
Target:  5'- -gGCGCUgCUCcGGGUuguaGCCCCCCa-- -3'
miRNA:   3'- ugCGCGAgGGGaCCCA----CGGGGGGcug -5'
21690 5' -66.5 NC_004812.1 + 145552 0.66 0.425375
Target:  5'- uCGCGCUggUCCCgGGGUcggGCgCCaCCGGCg -3'
miRNA:   3'- uGCGCGA--GGGGaCCCA---CGgGG-GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 51374 0.66 0.425375
Target:  5'- gACGCGUcgCCCgCccGGGUGUCCUUCGAa -3'
miRNA:   3'- -UGCGCGa-GGG-Ga-CCCACGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 10029 0.66 0.417139
Target:  5'- gACGUcUUCUCCUGGacgcgauucUGCaCCCCCGACg -3'
miRNA:   3'- -UGCGcGAGGGGACCc--------ACG-GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 151008 0.66 0.417139
Target:  5'- cCG-GC-CCCCUGGGggaccccGCCCCCCccguGGCc -3'
miRNA:   3'- uGCgCGaGGGGACCCa------CGGGGGG----CUG- -5'
21690 5' -66.5 NC_004812.1 + 132685 0.66 0.417139
Target:  5'- gAUGUGCUCCCCcucGGUGUaCUCCGAg -3'
miRNA:   3'- -UGCGCGAGGGGac-CCACGgGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 74765 0.66 0.417139
Target:  5'- cGCGCGCggCCCCgaGGG---CCUCCGGCg -3'
miRNA:   3'- -UGCGCGa-GGGGa-CCCacgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 112491 0.66 0.417139
Target:  5'- cGCGCGCUCCCCcGGa-----CCCGACg -3'
miRNA:   3'- -UGCGCGAGGGGaCCcacgggGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 120107 0.66 0.417139
Target:  5'- cCG-GC-CCCCUGGGggaccccGCCCCCCccguGGCc -3'
miRNA:   3'- uGCgCGaGGGGACCCa------CGGGGGG----CUG- -5'
21690 5' -66.5 NC_004812.1 + 145949 0.67 0.409003
Target:  5'- -gGCGCUgCgCUGGGUGCggggcaCCCUCGGg -3'
miRNA:   3'- ugCGCGAgGgGACCCACG------GGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 35483 0.67 0.409003
Target:  5'- gGCGCGCgagaUCCCCgagGGGaucGCgaUCUCCGACu -3'
miRNA:   3'- -UGCGCG----AGGGGa--CCCa--CG--GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 149152 0.67 0.409003
Target:  5'- cGCGCGgUCCCCgcggaggcgagGGGcgGCgUCCCCGGu -3'
miRNA:   3'- -UGCGCgAGGGGa----------CCCa-CG-GGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 120709 0.67 0.409003
Target:  5'- cCGCccccGCcCgCCCUGcGGcgcacgGCCCCCCGGCg -3'
miRNA:   3'- uGCG----CGaG-GGGAC-CCa-----CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 23644 0.67 0.409003
Target:  5'- cGCGCGgUCCCCgcggaggcgagGGGcgGCgUCCCCGGu -3'
miRNA:   3'- -UGCGCgAGGGGa----------CCCa-CG-GGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 74705 0.67 0.409003
Target:  5'- uCGCGUUCgCCCUgcGGGUGCUggCCUgGGCc -3'
miRNA:   3'- uGCGCGAG-GGGA--CCCACGG--GGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 127376 0.67 0.409003
Target:  5'- aACGUGCUCaCCUgcucGGcGUGgUCCCCGAg -3'
miRNA:   3'- -UGCGCGAG-GGGa---CC-CACgGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 151610 0.67 0.409003
Target:  5'- cCGCccccGCcCgCCCUGcGGcgcacgGCCCCCCGGCg -3'
miRNA:   3'- uGCG----CGaG-GGGAC-CCa-----CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 17154 0.67 0.409003
Target:  5'- gUGCGUcccgCCCCU-GGUGCUCCCCcaucGGCu -3'
miRNA:   3'- uGCGCGa---GGGGAcCCACGGGGGG----CUG- -5'
21690 5' -66.5 NC_004812.1 + 2113 0.67 0.404168
Target:  5'- cCGCGCUCCCagucccagucccaguCcGGGgagGCCCCgCgGGCg -3'
miRNA:   3'- uGCGCGAGGG---------------GaCCCa--CGGGG-GgCUG- -5'
21690 5' -66.5 NC_004812.1 + 127622 0.67 0.404168
Target:  5'- cCGCGCUCCCagucccagucccaguCcGGGgagGCCCCgCgGGCg -3'
miRNA:   3'- uGCGCGAGGG---------------GaCCCa--CGGGG-GgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.