Results 81 - 100 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 62533 | 0.67 | 0.369843 |
Target: 5'- aGCGgGCggcaggggUUCCCgGGG-GCCCCCUGAg -3' miRNA: 3'- -UGCgCG--------AGGGGaCCCaCGGGGGGCUg -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 130828 | 0.67 | 0.369843 |
Target: 5'- aGCGCGUcgUCCgCCgGGGcGCCgCCCGGg -3' miRNA: 3'- -UGCGCG--AGG-GGaCCCaCGGgGGGCUg -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 5320 | 0.67 | 0.369843 |
Target: 5'- aGCGCGUcgUCCgCCgGGGcGCCgCCCGGg -3' miRNA: 3'- -UGCGCG--AGG-GGaCCCaCGGgGGGCUg -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 54873 | 0.67 | 0.362324 |
Target: 5'- gGCGgGCacgggggaCCCaGGGcccGCCCCCCGGCc -3' miRNA: 3'- -UGCgCGag------GGGaCCCa--CGGGGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 20159 | 0.67 | 0.362324 |
Target: 5'- cCGCGCggauUCgCCUGcGGUGCCgCCgGGCc -3' miRNA: 3'- uGCGCG----AGgGGAC-CCACGGgGGgCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 127658 | 0.67 | 0.362324 |
Target: 5'- uACGCGUUgCgCUGGGgcacgacGUCCCCgGGCg -3' miRNA: 3'- -UGCGCGAgGgGACCCa------CGGGGGgCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 48695 | 0.67 | 0.362324 |
Target: 5'- -gGCGCUCUguggCUGGGggacGCaCCCCCGAg -3' miRNA: 3'- ugCGCGAGGg---GACCCa---CG-GGGGGCUg -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 15607 | 0.68 | 0.354913 |
Target: 5'- -gGUGUccggggCCCCUGcGUGgCCCCCGGCu -3' miRNA: 3'- ugCGCGa-----GGGGACcCACgGGGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 123763 | 0.68 | 0.354913 |
Target: 5'- uGC-CGCUggcCgCCCUGGGggccGCCCCCCGcCc -3' miRNA: 3'- -UGcGCGA---G-GGGACCCa---CGGGGGGCuG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 125701 | 0.68 | 0.354913 |
Target: 5'- cGCGCGCgcgCCgCCgGGGgaggGCCcgggucgcgcagCCCCGGCc -3' miRNA: 3'- -UGCGCGa--GG-GGaCCCa---CGG------------GGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 132102 | 0.68 | 0.354913 |
Target: 5'- cCGCaGC-CCCCgcggcgcgGGG-GCCCCCCGuCc -3' miRNA: 3'- uGCG-CGaGGGGa-------CCCaCGGGGGGCuG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 192 | 0.68 | 0.354913 |
Target: 5'- cGCGCGCgcgCCgCCgGGGgaggGCCcgggucgcgcagCCCCGGCc -3' miRNA: 3'- -UGCGCGa--GG-GGaCCCa---CGG------------GGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 63034 | 0.68 | 0.353444 |
Target: 5'- cGCGCGCUuggcCCCCggggaggcgGGGgcgucuggcuccGCCCCCaCGGCc -3' miRNA: 3'- -UGCGCGA----GGGGa--------CCCa-----------CGGGGG-GCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 101448 | 0.68 | 0.352711 |
Target: 5'- -aGCGCgUCCCCggUGaGGUGCCaggccagcuccuggCCCUGGCg -3' miRNA: 3'- ugCGCG-AGGGG--AC-CCACGG--------------GGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 20488 | 0.68 | 0.352711 |
Target: 5'- cACGCGCccgaCCCCcgggaaggugUGGGUGCUcuucaccgucugcaCCCCGAa -3' miRNA: 3'- -UGCGCGa---GGGG----------ACCCACGG--------------GGGGCUg -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 4186 | 0.68 | 0.347609 |
Target: 5'- cACGUGgaCgCCgaGGGcGCCCCCgCGGCg -3' miRNA: 3'- -UGCGCgaG-GGgaCCCaCGGGGG-GCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 110858 | 0.68 | 0.347609 |
Target: 5'- uCGcCGuCUCCCCUcGGGcuccgcggaGCCCgCCCGGCg -3' miRNA: 3'- uGC-GC-GAGGGGA-CCCa--------CGGG-GGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 35087 | 0.68 | 0.347609 |
Target: 5'- cACGUGgaCgCCgaGGGcGCCCCCgCGGCg -3' miRNA: 3'- -UGCGCgaG-GGgaCCCaCGGGGG-GCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 136521 | 0.68 | 0.347609 |
Target: 5'- gGCGCGCUCCUCcGaGGcGUCCgCUGGCu -3' miRNA: 3'- -UGCGCGAGGGGaC-CCaCGGGgGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 79680 | 0.68 | 0.346885 |
Target: 5'- uGCGCccGCUCCCCgacuucggggggcUgcGGGUGgCCCCCGcCg -3' miRNA: 3'- -UGCG--CGAGGGG-------------A--CCCACgGGGGGCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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