miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 69 0.68 0.340414
Target:  5'- gGCGgGCUCCC--GGGcggGCUCCCgGGCg -3'
miRNA:   3'- -UGCgCGAGGGgaCCCa--CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 158 0.66 0.46533
Target:  5'- aACGCGCccCCCCgaacgaacccccGCCCCCCGAa -3'
miRNA:   3'- -UGCGCGa-GGGGaccca-------CGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 192 0.68 0.354913
Target:  5'- cGCGCGCgcgCCgCCgGGGgaggGCCcgggucgcgcagCCCCGGCc -3'
miRNA:   3'- -UGCGCGa--GG-GGaCCCa---CGG------------GGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 944 0.71 0.213636
Target:  5'- cGCGCGCUCCCggCUGuGGagGCCUaggggagCCCGGCg -3'
miRNA:   3'- -UGCGCGAGGG--GAC-CCa-CGGG-------GGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 1021 0.66 0.433706
Target:  5'- cCGCGC-CCCCgcgaGGGcccgGCCgCCCGcGCg -3'
miRNA:   3'- uGCGCGaGGGGa---CCCa---CGGgGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 1567 0.73 0.146927
Target:  5'- cGCGCGCgagCCgCCcGGGUcCCCCCCGcACg -3'
miRNA:   3'- -UGCGCGa--GG-GGaCCCAcGGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 2113 0.67 0.404168
Target:  5'- cCGCGCUCCCagucccagucccaguCcGGGgagGCCCCgCgGGCg -3'
miRNA:   3'- uGCGCGAGGG---------------GaCCCa--CGGGG-GgCUG- -5'
21690 5' -66.5 NC_004812.1 + 2964 0.69 0.274437
Target:  5'- uGCGCGCccucUCCCCgcccgcccgcaUGGGcgGCCCgucaCCGACa -3'
miRNA:   3'- -UGCGCG----AGGGG-----------ACCCa-CGGGg---GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 3149 0.7 0.256747
Target:  5'- cCGCGCUCCCCUcc--GCCCCCCcccGCg -3'
miRNA:   3'- uGCGCGAGGGGAcccaCGGGGGGc--UG- -5'
21690 5' -66.5 NC_004812.1 + 3411 0.69 0.280547
Target:  5'- cCGC-CUCCCCccGGcgGCCCUCCGGCg -3'
miRNA:   3'- uGCGcGAGGGGacCCa-CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 3441 0.68 0.319478
Target:  5'- cCGCGCcCCCCgUGGuccccgugGCCCCCCGcccGCg -3'
miRNA:   3'- uGCGCGaGGGG-ACCca------CGGGGGGC---UG- -5'
21690 5' -66.5 NC_004812.1 + 3495 0.67 0.400965
Target:  5'- cCGCGCccgCCCCcGGGgcgGCgCCCaGACa -3'
miRNA:   3'- uGCGCGa--GGGGaCCCa--CGgGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 4186 0.68 0.347609
Target:  5'- cACGUGgaCgCCgaGGGcGCCCCCgCGGCg -3'
miRNA:   3'- -UGCGCgaG-GGgaCCCaCGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 4567 0.66 0.450648
Target:  5'- uCGCGCcaCCCUUGGacccccggGCCCgCCGACc -3'
miRNA:   3'- uGCGCGa-GGGGACCca------CGGGgGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 4679 0.7 0.251062
Target:  5'- cGCGCGCcggCgCCgagGGGaGCgCCCCCGGCc -3'
miRNA:   3'- -UGCGCGa--GgGGa--CCCaCG-GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 5320 0.67 0.369843
Target:  5'- aGCGCGUcgUCCgCCgGGGcGCCgCCCGGg -3'
miRNA:   3'- -UGCGCG--AGG-GGaCCCaCGGgGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 5560 0.66 0.445527
Target:  5'- uCGgGCUCCUCgGGGUccggcguucgcggcgGCCCgUCGGCg -3'
miRNA:   3'- uGCgCGAGGGGaCCCA---------------CGGGgGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 5913 0.66 0.459254
Target:  5'- cCGgGCggcaggcagaCCCCgGGGcagGCCCCCgGGCa -3'
miRNA:   3'- uGCgCGa---------GGGGaCCCa--CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 7984 0.66 0.467947
Target:  5'- gGCGCGCgggCgCCggucagggGGGcGCUCCCgCGACc -3'
miRNA:   3'- -UGCGCGa--GgGGa-------CCCaCGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 8159 0.81 0.044556
Target:  5'- cGCGCGCUCaCCUGGG-GCCCCCCa-- -3'
miRNA:   3'- -UGCGCGAGgGGACCCaCGGGGGGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.