miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 8951 0.76 0.103752
Target:  5'- gACGCGCUCCCCUcGGGagguucacgaaucgUGCgCCCaCUGGCg -3'
miRNA:   3'- -UGCGCGAGGGGA-CCC--------------ACG-GGG-GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 10029 0.66 0.417139
Target:  5'- gACGUcUUCUCCUGGacgcgauucUGCaCCCCCGACg -3'
miRNA:   3'- -UGCGcGAGGGGACCc--------ACG-GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 15128 0.68 0.336148
Target:  5'- aGCGCGCguccggccgcgucgCCUCgGGG-GCUCCCCGcACg -3'
miRNA:   3'- -UGCGCGa-------------GGGGaCCCaCGGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 15607 0.68 0.354913
Target:  5'- -gGUGUccggggCCCCUGcGUGgCCCCCGGCu -3'
miRNA:   3'- ugCGCGa-----GGGGACcCACgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 16659 0.69 0.306066
Target:  5'- cGCGCGCUCCCg-----GCCCCCCGcCc -3'
miRNA:   3'- -UGCGCGAGGGgacccaCGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 17154 0.67 0.409003
Target:  5'- gUGCGUcccgCCCCU-GGUGCUCCCCcaucGGCu -3'
miRNA:   3'- uGCGCGa---GGGGAcCCACGGGGGG----CUG- -5'
21690 5' -66.5 NC_004812.1 + 20159 0.67 0.362324
Target:  5'- cCGCGCggauUCgCCUGcGGUGCCgCCgGGCc -3'
miRNA:   3'- uGCGCG----AGgGGAC-CCACGGgGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 20488 0.68 0.352711
Target:  5'- cACGCGCccgaCCCCcgggaaggugUGGGUGCUcuucaccgucugcaCCCCGAa -3'
miRNA:   3'- -UGCGCGa---GGGG----------ACCCACGG--------------GGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 20503 0.66 0.467947
Target:  5'- gGCG-GCagagCCCCUGGGca-CCCCCGuCg -3'
miRNA:   3'- -UGCgCGa---GGGGACCCacgGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 22276 0.66 0.432868
Target:  5'- gGCGCGCgUCUuucggagCgaGGGUGaCCCUCUGGCg -3'
miRNA:   3'- -UGCGCG-AGG-------GgaCCCAC-GGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 23513 0.66 0.433706
Target:  5'- uACGUGCgggugCUgCUGGG-GCCCCacguCGGCg -3'
miRNA:   3'- -UGCGCGa----GGgGACCCaCGGGGg---GCUG- -5'
21690 5' -66.5 NC_004812.1 + 23644 0.67 0.409003
Target:  5'- cGCGCGgUCCCCgcggaggcgagGGGcgGCgUCCCCGGu -3'
miRNA:   3'- -UGCGCgAGGGGa----------CCCa-CG-GGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 24888 0.67 0.396192
Target:  5'- gGCGCagGCUCaCCCccuccucgucgagggUGcGGUGCCUUCCGAUg -3'
miRNA:   3'- -UGCG--CGAG-GGG---------------AC-CCACGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 25761 0.7 0.251062
Target:  5'- cCGCGC-CCCCgccgaccccGGGcgGCgCCCCGGCg -3'
miRNA:   3'- uGCGCGaGGGGa--------CCCa-CGgGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 25968 0.66 0.425375
Target:  5'- gACGcCGCcgUCCCC-GGGcgGCCCCgaugaCGACg -3'
miRNA:   3'- -UGC-GCG--AGGGGaCCCa-CGGGGg----GCUG- -5'
21690 5' -66.5 NC_004812.1 + 26029 0.67 0.377467
Target:  5'- -gGgGCUCCacguCCaGGG-GCCCCCgGACg -3'
miRNA:   3'- ugCgCGAGG----GGaCCCaCGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 26258 0.66 0.442131
Target:  5'- cCGCGCcgCCgCgGGccGUGCCCCUgGACg -3'
miRNA:   3'- uGCGCGa-GGgGaCC--CACGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 26271 0.7 0.256747
Target:  5'- gACGCGg-CCgCgcGGGUGCCCCgCGGCg -3'
miRNA:   3'- -UGCGCgaGGgGa-CCCACGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 26380 0.67 0.3767
Target:  5'- cGCGUGCUCUacggcggCCUGGGcgacaGCCgCCCGGg -3'
miRNA:   3'- -UGCGCGAGG-------GGACCCa----CGGgGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 26953 0.66 0.450648
Target:  5'- cCGCGCagcgCCgCCUGGcGgccGCCCUcuCCGACg -3'
miRNA:   3'- uGCGCGa---GG-GGACC-Ca--CGGGG--GGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.