miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 29046 0.68 0.319478
Target:  5'- gGCGCGC-CCCCUcccccGcGCCCCCCGcCg -3'
miRNA:   3'- -UGCGCGaGGGGAcc---CaCGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 29318 0.67 0.39303
Target:  5'- aGCGCGCcaccguUUUCCU-GGUGCCCCgCCGcCa -3'
miRNA:   3'- -UGCGCG------AGGGGAcCCACGGGG-GGCuG- -5'
21690 5' -66.5 NC_004812.1 + 30183 0.66 0.450648
Target:  5'- cGCGCGCggCUgCCUGGGgggcacaGCuCCCCCaGCg -3'
miRNA:   3'- -UGCGCGa-GG-GGACCCa------CG-GGGGGcUG- -5'
21690 5' -66.5 NC_004812.1 + 30891 0.7 0.268434
Target:  5'- aGCGCGCggCCCCgcgccccgcGGGcaCCUCCCGGCa -3'
miRNA:   3'- -UGCGCGa-GGGGa--------CCCacGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 31059 0.66 0.46533
Target:  5'- aACGCGCccCCCCgaacgaacccccGCCCCCCGAa -3'
miRNA:   3'- -UGCGCGa-GGGGaccca-------CGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 31938 0.69 0.310044
Target:  5'- cGCuCGCUCCCCgGGGccagcgucaggacgUcgcccaggaucucGCCCCCCGGCc -3'
miRNA:   3'- -UGcGCGAGGGGaCCC--------------A-------------CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 32169 0.71 0.219104
Target:  5'- -gGCGC-CCCCgcgcggaccGGGUGCCUCCgGGCc -3'
miRNA:   3'- ugCGCGaGGGGa--------CCCACGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 33865 0.69 0.312718
Target:  5'- uGCGCGCccucUCCCCgcccgcccgcaUGGGccgGCCCgucaCCGACa -3'
miRNA:   3'- -UGCGCG----AGGGG-----------ACCCa--CGGGg---GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 34050 0.7 0.256747
Target:  5'- cCGCGCUCCCCUcc--GCCCCCCcccGCg -3'
miRNA:   3'- uGCGCGAGGGGAcccaCGGGGGGc--UG- -5'
21690 5' -66.5 NC_004812.1 + 34312 0.69 0.280547
Target:  5'- cCGC-CUCCCCccGGcgGCCCUCCGGCg -3'
miRNA:   3'- uGCGcGAGGGGacCCa-CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 34342 0.68 0.319478
Target:  5'- cCGCGCcCCCCgUGGuccccgugGCCCCCCGcccGCg -3'
miRNA:   3'- uGCGCGaGGGG-ACCca------CGGGGGGC---UG- -5'
21690 5' -66.5 NC_004812.1 + 34396 0.67 0.400965
Target:  5'- cCGCGCccgCCCCcGGGgcgGCgCCCaGACa -3'
miRNA:   3'- uGCGCGa--GGGGaCCCa--CGgGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 35087 0.68 0.347609
Target:  5'- cACGUGgaCgCCgaGGGcGCCCCCgCGGCg -3'
miRNA:   3'- -UGCGCgaG-GGgaCCCaCGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 35468 0.66 0.450648
Target:  5'- uCGCGCcaCCCUUGGacccccggGCCCgCCGACc -3'
miRNA:   3'- uGCGCGa-GGGGACCca------CGGGgGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 35483 0.67 0.409003
Target:  5'- gGCGCGCgagaUCCCCgagGGGaucGCgaUCUCCGACu -3'
miRNA:   3'- -UGCGCG----AGGGGa--CCCa--CG--GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 35580 0.7 0.251062
Target:  5'- cGCGCGCcggCgCCgagGGGaGCgCCCCCGGCc -3'
miRNA:   3'- -UGCGCGa--GgGGa--CCCaCG-GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 36814 0.66 0.459254
Target:  5'- cCGgGCggcaggcagaCCCCgGGGcagGCCCCCgGGCa -3'
miRNA:   3'- uGCgCGa---------GGGGaCCCa--CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 39060 0.81 0.044556
Target:  5'- cGCGCGCUCaCCUGGG-GCCCCCCa-- -3'
miRNA:   3'- -UGCGCGAGgGGACCCaCGGGGGGcug -5'
21690 5' -66.5 NC_004812.1 + 40756 0.68 0.326348
Target:  5'- -gGCGCgggagCCCCgagcgGGGU-UCCCCUGGCa -3'
miRNA:   3'- ugCGCGa----GGGGa----CCCAcGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 41577 0.67 0.39303
Target:  5'- gACGUGCagCCCgUGGGcgagcacgaagUGUUCCUCGACa -3'
miRNA:   3'- -UGCGCGa-GGGgACCC-----------ACGGGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.