miRNA display CGI


Results 61 - 80 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 43245 0.66 0.425375
Target:  5'- -gGCGCUgCUCcGGGUuguaGCCCCCCa-- -3'
miRNA:   3'- ugCGCGAgGGGaCCCA----CGGGGGGcug -5'
21690 5' -66.5 NC_004812.1 + 46434 0.69 0.306066
Target:  5'- -gGCGCUCCCCUGGGcgcUGgCgCUgGGCc -3'
miRNA:   3'- ugCGCGAGGGGACCC---ACgGgGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 47328 0.66 0.433706
Target:  5'- gGCGCGCagguaggCCUCUGcGGUcGCgCCCCG-Ca -3'
miRNA:   3'- -UGCGCGa------GGGGAC-CCA-CGgGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 47641 0.7 0.261954
Target:  5'- cCGC-CUCCCCaccGGGUcccgcgaucccccGCgCCCCCGACa -3'
miRNA:   3'- uGCGcGAGGGGa--CCCA-------------CG-GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 48695 0.67 0.362324
Target:  5'- -gGCGCUCUguggCUGGGggacGCaCCCCCGAg -3'
miRNA:   3'- ugCGCGAGGg---GACCCa---CG-GGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 48953 0.7 0.24548
Target:  5'- gGCGUGCUgccggccgCCCCcGGcgacGUGCCCCgCGACg -3'
miRNA:   3'- -UGCGCGA--------GGGGaCC----CACGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 50027 0.76 0.09238
Target:  5'- -gGCGCUCCCCcccGcGG-GCCCCCUGGCg -3'
miRNA:   3'- ugCGCGAGGGGa--C-CCaCGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 50948 0.7 0.260209
Target:  5'- uACGCGC-CCCaccaccacgccgGGGUGUaCCCCGGCg -3'
miRNA:   3'- -UGCGCGaGGGga----------CCCACGgGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 51374 0.66 0.425375
Target:  5'- gACGCGUcgCCCgCccGGGUGUCCUUCGAa -3'
miRNA:   3'- -UGCGCGa-GGG-Ga-CCCACGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 52642 0.67 0.385196
Target:  5'- cCGCaGCcCCCCguuccGGU-CCCCCCGGCg -3'
miRNA:   3'- uGCG-CGaGGGGac---CCAcGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 54768 0.67 0.39937
Target:  5'- gGCGCGCgggcggCUacgGGGgcggcuggucggGCCCCCCGGCc -3'
miRNA:   3'- -UGCGCGa-----GGggaCCCa-----------CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 54873 0.67 0.362324
Target:  5'- gGCGgGCacgggggaCCCaGGGcccGCCCCCCGGCc -3'
miRNA:   3'- -UGCgCGag------GGGaCCCa--CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 55769 0.73 0.169527
Target:  5'- uCGCGCccugCCCCUGGGcaGCCCCgCGGu -3'
miRNA:   3'- uGCGCGa---GGGGACCCa-CGGGGgGCUg -5'
21690 5' -66.5 NC_004812.1 + 56738 0.67 0.400965
Target:  5'- -gGCGCggCCgUGGGgGCCCUgCGGCa -3'
miRNA:   3'- ugCGCGagGGgACCCaCGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 58060 0.66 0.433706
Target:  5'- aGCGCGUggacUCCCUcGGcGCCCUgCGACg -3'
miRNA:   3'- -UGCGCGa---GGGGAcCCaCGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 60090 0.66 0.450648
Target:  5'- cGCGgGCgagCCCC-GGGUGCCCggggcagggUCCGcCg -3'
miRNA:   3'- -UGCgCGa--GGGGaCCCACGGG---------GGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 60258 0.67 0.384418
Target:  5'- -gGCGCUcgaagccCCCCUGGGccGCCuUUCCGGCc -3'
miRNA:   3'- ugCGCGA-------GGGGACCCa-CGG-GGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 60299 0.69 0.306066
Target:  5'- uCGCGCcccCCCUUGGGgGCCuugCCCUGGCc -3'
miRNA:   3'- uGCGCGa--GGGGACCCaCGG---GGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 61076 0.68 0.333326
Target:  5'- gGCGCGacgCCCC-GGGccGCCCCgCCGGg -3'
miRNA:   3'- -UGCGCga-GGGGaCCCa-CGGGG-GGCUg -5'
21690 5' -66.5 NC_004812.1 + 62533 0.67 0.369843
Target:  5'- aGCGgGCggcaggggUUCCCgGGG-GCCCCCUGAg -3'
miRNA:   3'- -UGCgCG--------AGGGGaCCCaCGGGGGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.