miRNA display CGI


Results 81 - 100 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 63034 0.68 0.353444
Target:  5'- cGCGCGCUuggcCCCCggggaggcgGGGgcgucuggcuccGCCCCCaCGGCc -3'
miRNA:   3'- -UGCGCGA----GGGGa--------CCCa-----------CGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 65393 0.68 0.340414
Target:  5'- gACGCGCUCCgcgagCUGGacgccgcGCCCCCCGcCc -3'
miRNA:   3'- -UGCGCGAGGg----GACCca-----CGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 65436 0.7 0.24548
Target:  5'- cCGCGUcCCUCggggagGGGU-CCCCCCGGCc -3'
miRNA:   3'- uGCGCGaGGGGa-----CCCAcGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 65521 0.7 0.262538
Target:  5'- -gGCGCgCCCCUGGc-GCCCCCCc-- -3'
miRNA:   3'- ugCGCGaGGGGACCcaCGGGGGGcug -5'
21690 5' -66.5 NC_004812.1 + 69219 0.69 0.274437
Target:  5'- uCGCGC-CCCCacGGG-GCCCCCgGGg -3'
miRNA:   3'- uGCGCGaGGGGa-CCCaCGGGGGgCUg -5'
21690 5' -66.5 NC_004812.1 + 72279 0.7 0.251062
Target:  5'- cCGCcuGC-CCCCgcccgGGGcGCUCCCCGGCg -3'
miRNA:   3'- uGCG--CGaGGGGa----CCCaCGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 72857 0.7 0.262538
Target:  5'- gGCGCGCUggcgUCCCUGGcGgcaGCCgggcccgcguCCCCGGCa -3'
miRNA:   3'- -UGCGCGA----GGGGACC-Ca--CGG----------GGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 73110 0.7 0.268434
Target:  5'- uCGCGCaCCgCCUGGccGUcgcGCUCCCCGACg -3'
miRNA:   3'- uGCGCGaGG-GGACC--CA---CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 74705 0.67 0.409003
Target:  5'- uCGCGUUCgCCCUgcGGGUGCUggCCUgGGCc -3'
miRNA:   3'- uGCGCGAG-GGGA--CCCACGG--GGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 74765 0.66 0.417139
Target:  5'- cGCGCGCggCCCCgaGGG---CCUCCGGCg -3'
miRNA:   3'- -UGCGCGa-GGGGa-CCCacgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 74797 0.69 0.286764
Target:  5'- cACGCGC-CCCC-GcGG-GCCCgCCCGAa -3'
miRNA:   3'- -UGCGCGaGGGGaC-CCaCGGG-GGGCUg -5'
21690 5' -66.5 NC_004812.1 + 75769 0.71 0.214128
Target:  5'- gGC-CGCUCggcaccaCCacGGUGCCCCCCGACu -3'
miRNA:   3'- -UGcGCGAGg------GGacCCACGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 77559 0.69 0.280547
Target:  5'- aACGCGUccggCCgCUGGGccgcGgCCCCCGACc -3'
miRNA:   3'- -UGCGCGa---GGgGACCCa---CgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 78820 0.75 0.109786
Target:  5'- gGCGCaGCgggCCCCUGaccgugcggcGGUGUCCCCCGAg -3'
miRNA:   3'- -UGCG-CGa--GGGGAC----------CCACGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 79680 0.68 0.346885
Target:  5'- uGCGCccGCUCCCCgacuucggggggcUgcGGGUGgCCCCCGcCg -3'
miRNA:   3'- -UGCG--CGAGGGG-------------A--CCCACgGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 80235 0.66 0.425375
Target:  5'- cGCGCGCcucggCgCCCUGGGggcggcgGCCgcggaCCUGGCg -3'
miRNA:   3'- -UGCGCGa----G-GGGACCCa------CGGg----GGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 81182 0.67 0.377467
Target:  5'- cACGUGCUCCCCcgccagcagccUGGacgcgcgggcGUGgaugCCCCCGGCg -3'
miRNA:   3'- -UGCGCGAGGGG-----------ACC----------CACg---GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 82381 0.67 0.400965
Target:  5'- gGCGCGCggagaCCC-GGG-GCCCCUgGAg -3'
miRNA:   3'- -UGCGCGag---GGGaCCCaCGGGGGgCUg -5'
21690 5' -66.5 NC_004812.1 + 83216 0.69 0.312718
Target:  5'- cCGCGCUCgggggCCUcGGUgGCCCCCgGGCg -3'
miRNA:   3'- uGCGCGAGg----GGAcCCA-CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 83353 0.73 0.157862
Target:  5'- gACGCGCUgcuggcggcCCgCCUGGGggcgggccGCCCgCCCGACc -3'
miRNA:   3'- -UGCGCGA---------GG-GGACCCa-------CGGG-GGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.