miRNA display CGI


Results 101 - 120 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 83551 0.66 0.459254
Target:  5'- aGCGCGgUCUCCgGGaggccGUGCgCCCCGuGCa -3'
miRNA:   3'- -UGCGCgAGGGGaCC-----CACGgGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 83777 0.66 0.425375
Target:  5'- cCGCGCggCCgCUcgcgGGGaGCCCCCCGuGCc -3'
miRNA:   3'- uGCGCGa-GGgGA----CCCaCGGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 83908 0.68 0.319478
Target:  5'- uCGaggaGCUCCCgUucGUGUCCCCCGGCg -3'
miRNA:   3'- uGCg---CGAGGGgAccCACGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 84099 0.66 0.442131
Target:  5'- gGCcCGgaCCCCggcGGcGgcgcGCCCCCCGACc -3'
miRNA:   3'- -UGcGCgaGGGGa--CC-Ca---CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 84748 0.69 0.283021
Target:  5'- cGCGCGCUCCUgCaGGGgaucgugcgggcggGCCgCCCGGCc -3'
miRNA:   3'- -UGCGCGAGGG-GaCCCa-------------CGGgGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 85436 0.68 0.325656
Target:  5'- uCGCGCUCUacggaauCCUucgcccUGCCCCCCGACg -3'
miRNA:   3'- uGCGCGAGG-------GGAccc---ACGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 86110 0.67 0.400965
Target:  5'- aGCGCacccaaCUCCCCUGGGU-CaCCgCCGAUc -3'
miRNA:   3'- -UGCGc-----GAGGGGACCCAcG-GGgGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 86857 0.66 0.433706
Target:  5'- -gGCGCgagCgCaCUGG-UGCCCCCCGGu -3'
miRNA:   3'- ugCGCGa--GgG-GACCcACGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 90949 0.66 0.450648
Target:  5'- -gGCGCUCuCCCgcgGGGcuccgguagggGCUCCaCCGGCu -3'
miRNA:   3'- ugCGCGAG-GGGa--CCCa----------CGGGG-GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 94193 0.67 0.377467
Target:  5'- gACGCGCgagacgagucUCCCCUgccGGGUcuGCUCCucgCCGGCg -3'
miRNA:   3'- -UGCGCG----------AGGGGA---CCCA--CGGGG---GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 94424 0.7 0.268434
Target:  5'- gACGUccGC-CCCCUGuucgcgGCCCCCCGGCc -3'
miRNA:   3'- -UGCG--CGaGGGGACcca---CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 94462 0.69 0.274437
Target:  5'- cCuCGUUUCCCUGGGcGCCCUcgCCGGCg -3'
miRNA:   3'- uGcGCGAGGGGACCCaCGGGG--GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 97909 0.67 0.39303
Target:  5'- gACGCuGUUCCCCaacGGcaaGCCCCCgGGCu -3'
miRNA:   3'- -UGCG-CGAGGGGa--CCca-CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 100668 0.72 0.19978
Target:  5'- gACGCGCUCCUCgucgGGGgccagGCCaCCUCGcCa -3'
miRNA:   3'- -UGCGCGAGGGGa---CCCa----CGG-GGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 101448 0.68 0.352711
Target:  5'- -aGCGCgUCCCCggUGaGGUGCCaggccagcuccuggCCCUGGCg -3'
miRNA:   3'- ugCGCG-AGGGG--AC-CCACGG--------------GGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 103536 0.66 0.459254
Target:  5'- gGC-CGuCUCCaCCUGcGUGCccgugaCCCCCGACa -3'
miRNA:   3'- -UGcGC-GAGG-GGACcCACG------GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 105052 0.72 0.186276
Target:  5'- gGCGcCGCUCCggCCgcGGGcgcacacugGCCCCCCGGCg -3'
miRNA:   3'- -UGC-GCGAGG--GGa-CCCa--------CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 105232 0.7 0.234094
Target:  5'- gGCGC-CUCCCacugcugggcguaCUGGGgcgcgggcgGCUCCCCGGCg -3'
miRNA:   3'- -UGCGcGAGGG-------------GACCCa--------CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 105473 0.66 0.450648
Target:  5'- cGCGCGcCUCCCCgGGGUaguagggcgcGUCgUCCCGGu -3'
miRNA:   3'- -UGCGC-GAGGGGaCCCA----------CGG-GGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 106238 0.66 0.442131
Target:  5'- cACGCGC-CCCCggcgucggGGGcGCCCUaCCG-Cg -3'
miRNA:   3'- -UGCGCGaGGGGa-------CCCaCGGGG-GGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.