miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 156568 0.66 0.46533
Target:  5'- aACGCGCccCCCCgaacgaacccccGCCCCCCGAa -3'
miRNA:   3'- -UGCGCGa-GGGGaccca-------CGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 156479 0.68 0.340414
Target:  5'- gGCGgGCUCCC--GGGcggGCUCCCgGGCg -3'
miRNA:   3'- -UGCgCGAGGGgaCCCa--CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 155938 0.71 0.20925
Target:  5'- gACGCGCUCCCCUcgc-GCCgCCCgGGCg -3'
miRNA:   3'- -UGCGCGAGGGGAcccaCGG-GGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 154555 0.68 0.319478
Target:  5'- gGCGCGC-CCCCUcccccgcGCCCCCCGcCg -3'
miRNA:   3'- -UGCGCGaGGGGAccca---CGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 153702 0.71 0.224178
Target:  5'- gGCGgGCUCCCCcGGGcgGUCCaCCCaGAUg -3'
miRNA:   3'- -UGCgCGAGGGGaCCCa-CGGG-GGG-CUG- -5'
21690 5' -66.5 NC_004812.1 + 153280 0.66 0.459254
Target:  5'- gGCGCgGCggCCCCUcGGGccccUCCCCUGGCu -3'
miRNA:   3'- -UGCG-CGa-GGGGA-CCCac--GGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 152462 0.66 0.450648
Target:  5'- cCGCGCagcgCCgCCUGGcGgccGCCCUcuCCGACg -3'
miRNA:   3'- uGCGCGa---GG-GGACC-Ca--CGGGG--GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 151888 0.67 0.3767
Target:  5'- cGCGUGCUCUacggcggCCUGGGcgacaGCCgCCCGGg -3'
miRNA:   3'- -UGCGCGAGG-------GGACCCa----CGGgGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 151766 0.66 0.442131
Target:  5'- cCGCGCcgCCgCgGGccGUGCCCCUgGACg -3'
miRNA:   3'- uGCGCGa-GGgGaCC--CACGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 151610 0.67 0.409003
Target:  5'- cCGCccccGCcCgCCCUGcGGcgcacgGCCCCCCGGCg -3'
miRNA:   3'- uGCG----CGaG-GGGAC-CCa-----CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 151524 0.68 0.333326
Target:  5'- cCGC-CUCCCCggccGGaccccgGCCCCCCGAg -3'
miRNA:   3'- uGCGcGAGGGGa---CCca----CGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 151477 0.66 0.425375
Target:  5'- gACGcCGCcgUCCCC-GGGcgGCCCCgaugaCGACg -3'
miRNA:   3'- -UGC-GCG--AGGGGaCCCa-CGGGGg----GCUG- -5'
21690 5' -66.5 NC_004812.1 + 151269 0.7 0.251062
Target:  5'- cCGCGC-CCCCgccgaccccGGGcgGCgCCCCGGCg -3'
miRNA:   3'- uGCGCGaGGGGa--------CCCa-CGgGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 151170 0.69 0.306066
Target:  5'- gGCGCgaguccucuuccGCcCCUCUGGGgGgCCCCCGGCc -3'
miRNA:   3'- -UGCG------------CGaGGGGACCCaCgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 151107 0.68 0.336148
Target:  5'- uGCGCGgcgcccggcguccucCUCCCgUGGGUGacccucgcCCCCCCGu- -3'
miRNA:   3'- -UGCGC---------------GAGGGgACCCAC--------GGGGGGCug -5'
21690 5' -66.5 NC_004812.1 + 151053 0.69 0.306066
Target:  5'- gGCGCgaguccuccuccGCcCCUCUGGGgGgCCCCCGGCc -3'
miRNA:   3'- -UGCG------------CGaGGGGACCCaCgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 151008 0.66 0.417139
Target:  5'- cCG-GC-CCCCUGGGggaccccGCCCCCCccguGGCc -3'
miRNA:   3'- uGCgCGaGGGGACCCa------CGGGGGG----CUG- -5'
21690 5' -66.5 NC_004812.1 + 150657 0.69 0.312718
Target:  5'- cCGCGgcCUCCCC-GGGcccUGCCCCCUGuGCc -3'
miRNA:   3'- uGCGC--GAGGGGaCCC---ACGGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 150602 0.69 0.286764
Target:  5'- cCGCGUcCCCCUuccccucGCCCCCCGGCg -3'
miRNA:   3'- uGCGCGaGGGGAccca---CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 150321 0.72 0.190685
Target:  5'- gGCGcCGCUcCCCCUGGccGUG-CCCCUGGCc -3'
miRNA:   3'- -UGC-GCGA-GGGGACC--CACgGGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.