miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 150265 0.68 0.329126
Target:  5'- gGCGCGCcugccgcCCCCUGcugccccuccugcccGGgGCCCCCCG-Cg -3'
miRNA:   3'- -UGCGCGa------GGGGAC---------------CCaCGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 149152 0.67 0.409003
Target:  5'- cGCGCGgUCCCCgcggaggcgagGGGcgGCgUCCCCGGu -3'
miRNA:   3'- -UGCGCgAGGGGa----------CCCa-CG-GGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 148643 0.7 0.251062
Target:  5'- cGCGCGCUCUCCgcgucucucGGccccccccggacGcGCCCCCCGGCc -3'
miRNA:   3'- -UGCGCGAGGGGa--------CC------------CaCGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 148600 0.75 0.121069
Target:  5'- cCGCGCcCCCCgGGGUcgcgggagcGCCCCCCuGACc -3'
miRNA:   3'- uGCGCGaGGGGaCCCA---------CGGGGGG-CUG- -5'
21690 5' -66.5 NC_004812.1 + 148361 0.71 0.224178
Target:  5'- -gGCGC-CCCCgGGGgcgGaCCCCCGGCc -3'
miRNA:   3'- ugCGCGaGGGGaCCCa--CgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 145949 0.67 0.409003
Target:  5'- -gGCGCUgCgCUGGGUGCggggcaCCCUCGGg -3'
miRNA:   3'- ugCGCGAgGgGACCCACG------GGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 145552 0.66 0.425375
Target:  5'- uCGCGCUggUCCCgGGGUcggGCgCCaCCGGCg -3'
miRNA:   3'- uGCGCGA--GGGGaCCCA---CGgGG-GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 145024 0.71 0.20925
Target:  5'- cGCGCGgcguccCUCCCCcccGGUGCCCCagCGACg -3'
miRNA:   3'- -UGCGC------GAGGGGac-CCACGGGGg-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 144488 0.68 0.326348
Target:  5'- cGCGCGC-CCCCaac---CCCCCCGACg -3'
miRNA:   3'- -UGCGCGaGGGGacccacGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 143552 0.66 0.45408
Target:  5'- cGCGaGCUCCUgucgCUGGGggcgaccggggccgGCCCCgCGACc -3'
miRNA:   3'- -UGCgCGAGGG----GACCCa-------------CGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 140102 0.66 0.467947
Target:  5'- -aGCGCaucgCCCCcGc--GCCCCCCGGCc -3'
miRNA:   3'- ugCGCGa---GGGGaCccaCGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 136844 0.7 0.262538
Target:  5'- gGCGCGCgUCgCCUGGGa--CCCCCGcACc -3'
miRNA:   3'- -UGCGCG-AGgGGACCCacgGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 136521 0.68 0.347609
Target:  5'- gGCGCGCUCCUCcGaGGcGUCCgCUGGCu -3'
miRNA:   3'- -UGCGCGAGGGGaC-CCaCGGGgGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 134836 0.67 0.385196
Target:  5'- -gGCGCgCCCCgggGGGUGgCgaCCGACg -3'
miRNA:   3'- ugCGCGaGGGGa--CCCACgGggGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 132685 0.66 0.417139
Target:  5'- gAUGUGCUCCCCcucGGUGUaCUCCGAg -3'
miRNA:   3'- -UGCGCGAGGGGac-CCACGgGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 132102 0.68 0.354913
Target:  5'- cCGCaGC-CCCCgcggcgcgGGG-GCCCCCCGuCc -3'
miRNA:   3'- uGCG-CGaGGGGa-------CCCaCGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 131068 0.66 0.445527
Target:  5'- uCGgGCUCCUCgGGGUccggcguucgcggcgGCCCgUCGGCg -3'
miRNA:   3'- uGCgCGAGGGGaCCCA---------------CGGGgGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 130828 0.67 0.369843
Target:  5'- aGCGCGUcgUCCgCCgGGGcGCCgCCCGGg -3'
miRNA:   3'- -UGCGCG--AGG-GGaCCCaCGGgGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 129636 0.66 0.467947
Target:  5'- aGCGCGCcgagUUCgCgGGGcGCCCCCUGGg -3'
miRNA:   3'- -UGCGCG----AGGgGaCCCaCGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 127658 0.67 0.362324
Target:  5'- uACGCGUUgCgCUGGGgcacgacGUCCCCgGGCg -3'
miRNA:   3'- -UGCGCGAgGgGACCCa------CGGGGGgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.