miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 127622 0.67 0.404168
Target:  5'- cCGCGCUCCCagucccagucccaguCcGGGgagGCCCCgCgGGCg -3'
miRNA:   3'- uGCGCGAGGG---------------GaCCCa--CGGGG-GgCUG- -5'
21690 5' -66.5 NC_004812.1 + 127376 0.67 0.409003
Target:  5'- aACGUGCUCaCCUgcucGGcGUGgUCCCCGAg -3'
miRNA:   3'- -UGCGCGAG-GGGa---CC-CACgGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 127075 0.73 0.146927
Target:  5'- cGCGCGCgagCCgCCcGGGUcCCCCCCGcACg -3'
miRNA:   3'- -UGCGCGa--GG-GGaCCCAcGGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 126530 0.66 0.433706
Target:  5'- cCGCGC-CCCCgcgaGGGcccgGCCgCCCGcGCg -3'
miRNA:   3'- uGCGCGaGGGGa---CCCa---CGGgGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 126452 0.71 0.213636
Target:  5'- cGCGCGCUCCCggCUGuGGagGCCUaggggagCCCGGCg -3'
miRNA:   3'- -UGCGCGAGGG--GAC-CCa-CGGG-------GGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 126072 0.74 0.140026
Target:  5'- cCGCGCg-CCCUGcGccUGCCCCCCGGCg -3'
miRNA:   3'- uGCGCGagGGGACcC--ACGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 125737 0.7 0.252756
Target:  5'- cGCGCGCUgagccgcCCCCUcggccccccauggccGGGcgcGCCCCCgGGCg -3'
miRNA:   3'- -UGCGCGA-------GGGGA---------------CCCa--CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 125701 0.68 0.354913
Target:  5'- cGCGCGCgcgCCgCCgGGGgaggGCCcgggucgcgcagCCCCGGCc -3'
miRNA:   3'- -UGCGCGa--GG-GGaCCCa---CGG------------GGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 125578 0.68 0.340414
Target:  5'- gGCGgGCUCCC--GGGcggGCUCCCgGGCg -3'
miRNA:   3'- -UGCgCGAGGGgaCCCa--CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 125122 0.66 0.459254
Target:  5'- aGC-CGCcCUCCaGGGgGCCCCCCG-Ca -3'
miRNA:   3'- -UGcGCGaGGGGaCCCaCGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 125037 0.71 0.20925
Target:  5'- gACGCGCUCCCCUcgc-GCCgCCCgGGCg -3'
miRNA:   3'- -UGCGCGAGGGGAcccaCGG-GGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 123763 0.68 0.354913
Target:  5'- uGC-CGCUggcCgCCCUGGGggccGCCCCCCGcCc -3'
miRNA:   3'- -UGcGCGA---G-GGGACCCa---CGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 122801 0.71 0.224178
Target:  5'- gGCGgGCUCCCCcGGGcgGUCCaCCCaGAUg -3'
miRNA:   3'- -UGCgCGAGGGGaCCCa-CGGG-GGG-CUG- -5'
21690 5' -66.5 NC_004812.1 + 122379 0.66 0.459254
Target:  5'- gGCGCgGCggCCCCUcGGGccccUCCCCUGGCu -3'
miRNA:   3'- -UGCG-CGa-GGGGA-CCCac--GGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 121300 0.69 0.303436
Target:  5'- -gGCGCuUCCCCgcggugaucgcgcGGGUgcuGCCCaCCCGGCu -3'
miRNA:   3'- ugCGCG-AGGGGa------------CCCA---CGGG-GGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 120709 0.67 0.409003
Target:  5'- cCGCccccGCcCgCCCUGcGGcgcacgGCCCCCCGGCg -3'
miRNA:   3'- uGCG----CGaG-GGGAC-CCa-----CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 120623 0.68 0.333326
Target:  5'- cCGC-CUCCCCggccGGaccccgGCCCCCCGAg -3'
miRNA:   3'- uGCGcGAGGGGa---CCca----CGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 120269 0.69 0.306066
Target:  5'- gGCGCgaguccucuuccGCcCCUCUGGGgGgCCCCCGGCc -3'
miRNA:   3'- -UGCG------------CGaGGGGACCCaCgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 120206 0.68 0.336148
Target:  5'- uGCGCGgcgcccggcguccucCUCCCgUGGGUGacccucgcCCCCCCGu- -3'
miRNA:   3'- -UGCGC---------------GAGGGgACCCAC--------GGGGGGCug -5'
21690 5' -66.5 NC_004812.1 + 120152 0.69 0.306066
Target:  5'- gGCGCgaguccuccuccGCcCCUCUGGGgGgCCCCCGGCc -3'
miRNA:   3'- -UGCG------------CGaGGGGACCCaCgGGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.