miRNA display CGI


Results 61 - 80 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 120107 0.66 0.417139
Target:  5'- cCG-GC-CCCCUGGGggaccccGCCCCCCccguGGCc -3'
miRNA:   3'- uGCgCGaGGGGACCCa------CGGGGGG----CUG- -5'
21690 5' -66.5 NC_004812.1 + 119756 0.72 0.181957
Target:  5'- cCGCGcCUCCCC-GGGcccUGCCCCCUGuGCc -3'
miRNA:   3'- uGCGC-GAGGGGaCCC---ACGGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 119704 0.69 0.286764
Target:  5'- gGCGCGCaccgUCCCCcucGU-CCCCCCGACc -3'
miRNA:   3'- -UGCGCG----AGGGGaccCAcGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 119701 0.69 0.286764
Target:  5'- cCGCGUcCCCCUuccccucGCCCCCCGGCg -3'
miRNA:   3'- uGCGCGaGGGGAccca---CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 119420 0.72 0.190685
Target:  5'- gGCGcCGCUcCCCCUGGccGUG-CCCCUGGCc -3'
miRNA:   3'- -UGC-GCGA-GGGGACC--CACgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 119364 0.68 0.329126
Target:  5'- gGCGCGCcugccgcCCCCUGcugccccuccugcccGGgGCCCCCCG-Cg -3'
miRNA:   3'- -UGCGCGa------GGGGAC---------------CCaCGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 117742 0.7 0.24548
Target:  5'- cGCGCGCUCUCCgcgucucucGGcccccccggacGcGCCCCCCGGCc -3'
miRNA:   3'- -UGCGCGAGGGGa--------CC-----------CaCGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 117699 0.75 0.121069
Target:  5'- cCGCGCcCCCCgGGGUcgcgggagcGCCCCCCuGACc -3'
miRNA:   3'- uGCGCGaGGGGaCCCA---------CGGGGGG-CUG- -5'
21690 5' -66.5 NC_004812.1 + 117460 0.71 0.224178
Target:  5'- -gGCGC-CCCCgGGGgcgGaCCCCCGGCc -3'
miRNA:   3'- ugCGCGaGGGGaCCCa--CgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 115131 0.67 0.369843
Target:  5'- gGCGCGacgaCUCCCUgacgaGGGcgGCCCUgCGGCa -3'
miRNA:   3'- -UGCGC----GAGGGGa----CCCa-CGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 112491 0.66 0.417139
Target:  5'- cGCGCGCUCCCCcGGa-----CCCGACg -3'
miRNA:   3'- -UGCGCGAGGGGaCCcacgggGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 112274 0.69 0.299524
Target:  5'- cGCGCGC-CgCUCUGGGccgcGCCCgCCCGGg -3'
miRNA:   3'- -UGCGCGaG-GGGACCCa---CGGG-GGGCUg -5'
21690 5' -66.5 NC_004812.1 + 111641 0.67 0.400965
Target:  5'- cGCGgGC-CUCCUGcGcGCCCCCuCGGCg -3'
miRNA:   3'- -UGCgCGaGGGGACcCaCGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 110858 0.68 0.347609
Target:  5'- uCGcCGuCUCCCCUcGGGcuccgcggaGCCCgCCCGGCg -3'
miRNA:   3'- uGC-GC-GAGGGGA-CCCa--------CGGG-GGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 109766 0.74 0.133422
Target:  5'- cACGCGCgcaaCCCCUGacgGCCCCCuCGACc -3'
miRNA:   3'- -UGCGCGa---GGGGACccaCGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 106966 0.68 0.326348
Target:  5'- cGCGCGUaCCCCagGGGcGCCUCCCc-- -3'
miRNA:   3'- -UGCGCGaGGGGa-CCCaCGGGGGGcug -5'
21690 5' -66.5 NC_004812.1 + 106915 1.08 0.00039
Target:  5'- gACGCGCUCCCCUGGGUGCCCCCCGACa -3'
miRNA:   3'- -UGCGCGAGGGGACCCACGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 106238 0.66 0.442131
Target:  5'- cACGCGC-CCCCggcgucggGGGcGCCCUaCCG-Cg -3'
miRNA:   3'- -UGCGCGaGGGGa-------CCCaCGGGG-GGCuG- -5'
21690 5' -66.5 NC_004812.1 + 105473 0.66 0.450648
Target:  5'- cGCGCGcCUCCCCgGGGUaguagggcgcGUCgUCCCGGu -3'
miRNA:   3'- -UGCGC-GAGGGGaCCCA----------CGG-GGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 105232 0.7 0.234094
Target:  5'- gGCGC-CUCCCacugcugggcguaCUGGGgcgcgggcgGCUCCCCGGCg -3'
miRNA:   3'- -UGCGcGAGGG-------------GACCCa--------CGGGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.