Results 81 - 100 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 105052 | 0.72 | 0.186276 |
Target: 5'- gGCGcCGCUCCggCCgcGGGcgcacacugGCCCCCCGGCg -3' miRNA: 3'- -UGC-GCGAGG--GGa-CCCa--------CGGGGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 103536 | 0.66 | 0.459254 |
Target: 5'- gGC-CGuCUCCaCCUGcGUGCccgugaCCCCCGACa -3' miRNA: 3'- -UGcGC-GAGG-GGACcCACG------GGGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 101448 | 0.68 | 0.352711 |
Target: 5'- -aGCGCgUCCCCggUGaGGUGCCaggccagcuccuggCCCUGGCg -3' miRNA: 3'- ugCGCG-AGGGG--AC-CCACGG--------------GGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 100668 | 0.72 | 0.19978 |
Target: 5'- gACGCGCUCCUCgucgGGGgccagGCCaCCUCGcCa -3' miRNA: 3'- -UGCGCGAGGGGa---CCCa----CGG-GGGGCuG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 97909 | 0.67 | 0.39303 |
Target: 5'- gACGCuGUUCCCCaacGGcaaGCCCCCgGGCu -3' miRNA: 3'- -UGCG-CGAGGGGa--CCca-CGGGGGgCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 94462 | 0.69 | 0.274437 |
Target: 5'- cCuCGUUUCCCUGGGcGCCCUcgCCGGCg -3' miRNA: 3'- uGcGCGAGGGGACCCaCGGGG--GGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 94424 | 0.7 | 0.268434 |
Target: 5'- gACGUccGC-CCCCUGuucgcgGCCCCCCGGCc -3' miRNA: 3'- -UGCG--CGaGGGGACcca---CGGGGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 94193 | 0.67 | 0.377467 |
Target: 5'- gACGCGCgagacgagucUCCCCUgccGGGUcuGCUCCucgCCGGCg -3' miRNA: 3'- -UGCGCG----------AGGGGA---CCCA--CGGGG---GGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 90949 | 0.66 | 0.450648 |
Target: 5'- -gGCGCUCuCCCgcgGGGcuccgguagggGCUCCaCCGGCu -3' miRNA: 3'- ugCGCGAG-GGGa--CCCa----------CGGGG-GGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 86857 | 0.66 | 0.433706 |
Target: 5'- -gGCGCgagCgCaCUGG-UGCCCCCCGGu -3' miRNA: 3'- ugCGCGa--GgG-GACCcACGGGGGGCUg -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 86110 | 0.67 | 0.400965 |
Target: 5'- aGCGCacccaaCUCCCCUGGGU-CaCCgCCGAUc -3' miRNA: 3'- -UGCGc-----GAGGGGACCCAcG-GGgGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 85436 | 0.68 | 0.325656 |
Target: 5'- uCGCGCUCUacggaauCCUucgcccUGCCCCCCGACg -3' miRNA: 3'- uGCGCGAGG-------GGAccc---ACGGGGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 84748 | 0.69 | 0.283021 |
Target: 5'- cGCGCGCUCCUgCaGGGgaucgugcgggcggGCCgCCCGGCc -3' miRNA: 3'- -UGCGCGAGGG-GaCCCa-------------CGGgGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 84099 | 0.66 | 0.442131 |
Target: 5'- gGCcCGgaCCCCggcGGcGgcgcGCCCCCCGACc -3' miRNA: 3'- -UGcGCgaGGGGa--CC-Ca---CGGGGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 83908 | 0.68 | 0.319478 |
Target: 5'- uCGaggaGCUCCCgUucGUGUCCCCCGGCg -3' miRNA: 3'- uGCg---CGAGGGgAccCACGGGGGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 83777 | 0.66 | 0.425375 |
Target: 5'- cCGCGCggCCgCUcgcgGGGaGCCCCCCGuGCc -3' miRNA: 3'- uGCGCGa-GGgGA----CCCaCGGGGGGC-UG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 83551 | 0.66 | 0.459254 |
Target: 5'- aGCGCGgUCUCCgGGaggccGUGCgCCCCGuGCa -3' miRNA: 3'- -UGCGCgAGGGGaCC-----CACGgGGGGC-UG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 83353 | 0.73 | 0.157862 |
Target: 5'- gACGCGCUgcuggcggcCCgCCUGGGggcgggccGCCCgCCCGACc -3' miRNA: 3'- -UGCGCGA---------GG-GGACCCa-------CGGG-GGGCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 83216 | 0.69 | 0.312718 |
Target: 5'- cCGCGCUCgggggCCUcGGUgGCCCCCgGGCg -3' miRNA: 3'- uGCGCGAGg----GGAcCCA-CGGGGGgCUG- -5' |
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21690 | 5' | -66.5 | NC_004812.1 | + | 82381 | 0.67 | 0.400965 |
Target: 5'- gGCGCGCggagaCCC-GGG-GCCCCUgGAg -3' miRNA: 3'- -UGCGCGag---GGGaCCCaCGGGGGgCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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