miRNA display CGI


Results 1 - 20 of 197 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 26271 0.7 0.256747
Target:  5'- gACGCGg-CCgCgcGGGUGCCCCgCGGCg -3'
miRNA:   3'- -UGCGCgaGGgGa-CCCACGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 117460 0.71 0.224178
Target:  5'- -gGCGC-CCCCgGGGgcgGaCCCCCGGCc -3'
miRNA:   3'- ugCGCGaGGGGaCCCa--CgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 122801 0.71 0.224178
Target:  5'- gGCGgGCUCCCCcGGGcgGUCCaCCCaGAUg -3'
miRNA:   3'- -UGCgCGAGGGGaCCCa-CGGG-GGG-CUG- -5'
21690 5' -66.5 NC_004812.1 + 48953 0.7 0.24548
Target:  5'- gGCGUGCUgccggccgCCCCcGGcgacGUGCCCCgCGACg -3'
miRNA:   3'- -UGCGCGA--------GGGGaCC----CACGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 65436 0.7 0.24548
Target:  5'- cCGCGUcCCUCggggagGGGU-CCCCCCGGCc -3'
miRNA:   3'- uGCGCGaGGGGa-----CCCAcGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 117742 0.7 0.24548
Target:  5'- cGCGCGCUCUCCgcgucucucGGcccccccggacGcGCCCCCCGGCc -3'
miRNA:   3'- -UGCGCGAGGGGa--------CC-----------CaCGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 151269 0.7 0.251062
Target:  5'- cCGCGC-CCCCgccgaccccGGGcgGCgCCCCGGCg -3'
miRNA:   3'- uGCGCGaGGGGa--------CCCa-CGgGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 4679 0.7 0.251062
Target:  5'- cGCGCGCcggCgCCgagGGGaGCgCCCCCGGCc -3'
miRNA:   3'- -UGCGCGa--GgGGa--CCCaCG-GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 3149 0.7 0.256747
Target:  5'- cCGCGCUCCCCUcc--GCCCCCCcccGCg -3'
miRNA:   3'- uGCGCGAGGGGAcccaCGGGGGGc--UG- -5'
21690 5' -66.5 NC_004812.1 + 32169 0.71 0.219104
Target:  5'- -gGCGC-CCCCgcgcggaccGGGUGCCUCCgGGCc -3'
miRNA:   3'- ugCGCGaGGGGa--------CCCACGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 126452 0.71 0.213636
Target:  5'- cGCGCGCUCCCggCUGuGGagGCCUaggggagCCCGGCg -3'
miRNA:   3'- -UGCGCGAGGG--GAC-CCa-CGGG-------GGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 145024 0.71 0.20925
Target:  5'- cGCGCGgcguccCUCCCCcccGGUGCCCCagCGACg -3'
miRNA:   3'- -UGCGC------GAGGGGac-CCACGGGGg-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 8159 0.81 0.044556
Target:  5'- cGCGCGCUCaCCUGGG-GCCCCCCa-- -3'
miRNA:   3'- -UGCGCGAGgGGACCCaCGGGGGGcug -5'
21690 5' -66.5 NC_004812.1 + 50027 0.76 0.09238
Target:  5'- -gGCGCUCCCCcccGcGG-GCCCCCUGGCg -3'
miRNA:   3'- ugCGCGAGGGGa--C-CCaCGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 117699 0.75 0.121069
Target:  5'- cCGCGCcCCCCgGGGUcgcgggagcGCCCCCCuGACc -3'
miRNA:   3'- uGCGCGaGGGGaCCCA---------CGGGGGG-CUG- -5'
21690 5' -66.5 NC_004812.1 + 109766 0.74 0.133422
Target:  5'- cACGCGCgcaaCCCCUGacgGCCCCCuCGACc -3'
miRNA:   3'- -UGCGCGa---GGGGACccaCGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 127075 0.73 0.146927
Target:  5'- cGCGCGCgagCCgCCcGGGUcCCCCCCGcACg -3'
miRNA:   3'- -UGCGCGa--GG-GGaCCCAcGGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 119756 0.72 0.181957
Target:  5'- cCGCGcCUCCCC-GGGcccUGCCCCCUGuGCc -3'
miRNA:   3'- uGCGC-GAGGGGaCCC---ACGGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 119420 0.72 0.190685
Target:  5'- gGCGcCGCUcCCCCUGGccGUG-CCCCUGGCc -3'
miRNA:   3'- -UGC-GCGA-GGGGACC--CACgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 125037 0.71 0.20925
Target:  5'- gACGCGCUCCCCUcgc-GCCgCCCgGGCg -3'
miRNA:   3'- -UGCGCGAGGGGAcccaCGG-GGGgCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.