miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 127075 0.73 0.146927
Target:  5'- cGCGCGCgagCCgCCcGGGUcCCCCCCGcACg -3'
miRNA:   3'- -UGCGCGa--GG-GGaCCCAcGGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 109766 0.74 0.133422
Target:  5'- cACGCGCgcaaCCCCUGacgGCCCCCuCGACc -3'
miRNA:   3'- -UGCGCGa---GGGGACccaCGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 117699 0.75 0.121069
Target:  5'- cCGCGCcCCCCgGGGUcgcgggagcGCCCCCCuGACc -3'
miRNA:   3'- uGCGCGaGGGGaCCCA---------CGGGGGG-CUG- -5'
21690 5' -66.5 NC_004812.1 + 50027 0.76 0.09238
Target:  5'- -gGCGCUCCCCcccGcGG-GCCCCCUGGCg -3'
miRNA:   3'- ugCGCGAGGGGa--C-CCaCGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 8159 0.81 0.044556
Target:  5'- cGCGCGCUCaCCUGGG-GCCCCCCa-- -3'
miRNA:   3'- -UGCGCGAGgGGACCCaCGGGGGGcug -5'
21690 5' -66.5 NC_004812.1 + 48953 0.7 0.24548
Target:  5'- gGCGUGCUgccggccgCCCCcGGcgacGUGCCCCgCGACg -3'
miRNA:   3'- -UGCGCGA--------GGGGaCC----CACGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 65436 0.7 0.24548
Target:  5'- cCGCGUcCCUCggggagGGGU-CCCCCCGGCc -3'
miRNA:   3'- uGCGCGaGGGGa-----CCCAcGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 3411 0.69 0.280547
Target:  5'- cCGC-CUCCCCccGGcgGCCCUCCGGCg -3'
miRNA:   3'- uGCGcGAGGGGacCCa-CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 94462 0.69 0.274437
Target:  5'- cCuCGUUUCCCUGGGcGCCCUcgCCGGCg -3'
miRNA:   3'- uGcGCGAGGGGACCCaCGGGG--GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 2964 0.69 0.274437
Target:  5'- uGCGCGCccucUCCCCgcccgcccgcaUGGGcgGCCCgucaCCGACa -3'
miRNA:   3'- -UGCGCG----AGGGG-----------ACCCa-CGGGg---GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 69219 0.69 0.274437
Target:  5'- uCGCGC-CCCCacGGG-GCCCCCgGGg -3'
miRNA:   3'- uGCGCGaGGGGa-CCCaCGGGGGgCUg -5'
21690 5' -66.5 NC_004812.1 + 30891 0.7 0.268434
Target:  5'- aGCGCGCggCCCCgcgccccgcGGGcaCCUCCCGGCa -3'
miRNA:   3'- -UGCGCGa-GGGGa--------CCCacGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 94424 0.7 0.268434
Target:  5'- gACGUccGC-CCCCUGuucgcgGCCCCCCGGCc -3'
miRNA:   3'- -UGCG--CGaGGGGACcca---CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 47641 0.7 0.261954
Target:  5'- cCGC-CUCCCCaccGGGUcccgcgaucccccGCgCCCCCGACa -3'
miRNA:   3'- uGCGcGAGGGGa--CCCA-------------CG-GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 50948 0.7 0.260209
Target:  5'- uACGCGC-CCCaccaccacgccgGGGUGUaCCCCGGCg -3'
miRNA:   3'- -UGCGCGaGGGga----------CCCACGgGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 26271 0.7 0.256747
Target:  5'- gACGCGg-CCgCgcGGGUGCCCCgCGGCg -3'
miRNA:   3'- -UGCGCgaGGgGa-CCCACGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 3149 0.7 0.256747
Target:  5'- cCGCGCUCCCCUcc--GCCCCCCcccGCg -3'
miRNA:   3'- uGCGCGAGGGGAcccaCGGGGGGc--UG- -5'
21690 5' -66.5 NC_004812.1 + 4679 0.7 0.251062
Target:  5'- cGCGCGCcggCgCCgagGGGaGCgCCCCCGGCc -3'
miRNA:   3'- -UGCGCGa--GgGGa--CCCaCG-GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 151269 0.7 0.251062
Target:  5'- cCGCGC-CCCCgccgaccccGGGcgGCgCCCCGGCg -3'
miRNA:   3'- uGCGCGaGGGGa--------CCCa-CGgGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 117742 0.7 0.24548
Target:  5'- cGCGCGCUCUCCgcgucucucGGcccccccggacGcGCCCCCCGGCc -3'
miRNA:   3'- -UGCGCGAGGGGa--------CC-----------CaCGGGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.