Results 61 - 80 of 197 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 3149 | 0.7 | 0.256747 |
Target: 5'- cCGCGCUCCCCUcc--GCCCCCCcccGCg -3' miRNA: 3'- uGCGCGAGGGGAcccaCGGGGGGc--UG- -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 26271 | 0.7 | 0.256747 |
Target: 5'- gACGCGg-CCgCgcGGGUGCCCCgCGGCg -3' miRNA: 3'- -UGCGCgaGGgGa-CCCACGGGGgGCUG- -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 119701 | 0.69 | 0.286764 |
Target: 5'- cCGCGUcCCCCUuccccucGCCCCCCGGCg -3' miRNA: 3'- uGCGCGaGGGGAccca---CGGGGGGCUG- -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 46434 | 0.69 | 0.306066 |
Target: 5'- -gGCGCUCCCCUGGGcgcUGgCgCUgGGCc -3' miRNA: 3'- ugCGCGAGGGGACCC---ACgGgGGgCUG- -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 60299 | 0.69 | 0.306066 |
Target: 5'- uCGCGCcccCCCUUGGGgGCCuugCCCUGGCc -3' miRNA: 3'- uGCGCGa--GGGGACCCaCGG---GGGGCUG- -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 120152 | 0.69 | 0.306066 |
Target: 5'- gGCGCgaguccuccuccGCcCCUCUGGGgGgCCCCCGGCc -3' miRNA: 3'- -UGCG------------CGaGGGGACCCaCgGGGGGCUG- -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 120269 | 0.69 | 0.306066 |
Target: 5'- gGCGCgaguccucuuccGCcCCUCUGGGgGgCCCCCGGCc -3' miRNA: 3'- -UGCG------------CGaGGGGACCCaCgGGGGGCUG- -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 16659 | 0.69 | 0.306066 |
Target: 5'- cGCGCGCUCCCg-----GCCCCCCGcCc -3' miRNA: 3'- -UGCGCGAGGGgacccaCGGGGGGCuG- -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 31938 | 0.69 | 0.310044 |
Target: 5'- cGCuCGCUCCCCgGGGccagcgucaggacgUcgcccaggaucucGCCCCCCGGCc -3' miRNA: 3'- -UGcGCGAGGGGaCCC--------------A-------------CGGGGGGCUG- -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 3441 | 0.68 | 0.319478 |
Target: 5'- cCGCGCcCCCCgUGGuccccgugGCCCCCCGcccGCg -3' miRNA: 3'- uGCGCGaGGGG-ACCca------CGGGGGGC---UG- -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 74797 | 0.69 | 0.286764 |
Target: 5'- cACGCGC-CCCC-GcGG-GCCCgCCCGAa -3' miRNA: 3'- -UGCGCGaGGGGaC-CCaCGGG-GGGCUg -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 84748 | 0.69 | 0.283021 |
Target: 5'- cGCGCGCUCCUgCaGGGgaucgugcgggcggGCCgCCCGGCc -3' miRNA: 3'- -UGCGCGAGGG-GaCCCa-------------CGGgGGGCUG- -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 50948 | 0.7 | 0.260209 |
Target: 5'- uACGCGC-CCCaccaccacgccgGGGUGUaCCCCGGCg -3' miRNA: 3'- -UGCGCGaGGGga----------CCCACGgGGGGCUG- -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 47641 | 0.7 | 0.261954 |
Target: 5'- cCGC-CUCCCCaccGGGUcccgcgaucccccGCgCCCCCGACa -3' miRNA: 3'- uGCGcGAGGGGa--CCCA-------------CG-GGGGGCUG- -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 94424 | 0.7 | 0.268434 |
Target: 5'- gACGUccGC-CCCCUGuucgcgGCCCCCCGGCc -3' miRNA: 3'- -UGCG--CGaGGGGACcca---CGGGGGGCUG- -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 30891 | 0.7 | 0.268434 |
Target: 5'- aGCGCGCggCCCCgcgccccgcGGGcaCCUCCCGGCa -3' miRNA: 3'- -UGCGCGa-GGGGa--------CCCacGGGGGGCUG- -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 69219 | 0.69 | 0.274437 |
Target: 5'- uCGCGC-CCCCacGGG-GCCCCCgGGg -3' miRNA: 3'- uGCGCGaGGGGa-CCCaCGGGGGgCUg -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 2964 | 0.69 | 0.274437 |
Target: 5'- uGCGCGCccucUCCCCgcccgcccgcaUGGGcgGCCCgucaCCGACa -3' miRNA: 3'- -UGCGCG----AGGGG-----------ACCCa-CGGGg---GGCUG- -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 94462 | 0.69 | 0.274437 |
Target: 5'- cCuCGUUUCCCUGGGcGCCCUcgCCGGCg -3' miRNA: 3'- uGcGCGAGGGGACCCaCGGGG--GGCUG- -5' |
|||||||
21690 | 5' | -66.5 | NC_004812.1 | + | 3411 | 0.69 | 0.280547 |
Target: 5'- cCGC-CUCCCCccGGcgGCCCUCCGGCg -3' miRNA: 3'- uGCGcGAGGGGacCCa-CGGGGGGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home