miRNA display CGI


Results 81 - 100 of 197 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 65393 0.68 0.340414
Target:  5'- gACGCGCUCCgcgagCUGGacgccgcGCCCCCCGcCc -3'
miRNA:   3'- -UGCGCGAGGg----GACCca-----CGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 125578 0.68 0.340414
Target:  5'- gGCGgGCUCCC--GGGcggGCUCCCgGGCg -3'
miRNA:   3'- -UGCgCGAGGGgaCCCa--CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 16659 0.69 0.306066
Target:  5'- cGCGCGCUCCCg-----GCCCCCCGcCc -3'
miRNA:   3'- -UGCGCGAGGGgacccaCGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 120269 0.69 0.306066
Target:  5'- gGCGCgaguccucuuccGCcCCUCUGGGgGgCCCCCGGCc -3'
miRNA:   3'- -UGCG------------CGaGGGGACCCaCgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 69219 0.69 0.274437
Target:  5'- uCGCGC-CCCCacGGG-GCCCCCgGGg -3'
miRNA:   3'- uGCGCGaGGGGa-CCCaCGGGGGgCUg -5'
21690 5' -66.5 NC_004812.1 + 2964 0.69 0.274437
Target:  5'- uGCGCGCccucUCCCCgcccgcccgcaUGGGcgGCCCgucaCCGACa -3'
miRNA:   3'- -UGCGCG----AGGGG-----------ACCCa-CGGGg---GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 94462 0.69 0.274437
Target:  5'- cCuCGUUUCCCUGGGcGCCCUcgCCGGCg -3'
miRNA:   3'- uGcGCGAGGGGACCCaCGGGG--GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 3411 0.69 0.280547
Target:  5'- cCGC-CUCCCCccGGcgGCCCUCCGGCg -3'
miRNA:   3'- uGCGcGAGGGGacCCa-CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 84748 0.69 0.283021
Target:  5'- cGCGCGCUCCUgCaGGGgaucgugcgggcggGCCgCCCGGCc -3'
miRNA:   3'- -UGCGCGAGGG-GaCCCa-------------CGGgGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 74797 0.69 0.286764
Target:  5'- cACGCGC-CCCC-GcGG-GCCCgCCCGAa -3'
miRNA:   3'- -UGCGCGaGGGGaC-CCaCGGG-GGGCUg -5'
21690 5' -66.5 NC_004812.1 + 119701 0.69 0.286764
Target:  5'- cCGCGUcCCCCUuccccucGCCCCCCGGCg -3'
miRNA:   3'- uGCGCGaGGGGAccca---CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 46434 0.69 0.306066
Target:  5'- -gGCGCUCCCCUGGGcgcUGgCgCUgGGCc -3'
miRNA:   3'- ugCGCGAGGGGACCC---ACgGgGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 60299 0.69 0.306066
Target:  5'- uCGCGCcccCCCUUGGGgGCCuugCCCUGGCc -3'
miRNA:   3'- uGCGCGa--GGGGACCCaCGG---GGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 120152 0.69 0.306066
Target:  5'- gGCGCgaguccuccuccGCcCCUCUGGGgGgCCCCCGGCc -3'
miRNA:   3'- -UGCG------------CGaGGGGACCCaCgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 1567 0.73 0.146927
Target:  5'- cGCGCGCgagCCgCCcGGGUcCCCCCCGcACg -3'
miRNA:   3'- -UGCGCGa--GG-GGaCCCAcGGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 126072 0.74 0.140026
Target:  5'- cCGCGCg-CCCUGcGccUGCCCCCCGGCg -3'
miRNA:   3'- uGCGCGagGGGACcC--ACGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 148600 0.75 0.121069
Target:  5'- cCGCGCcCCCCgGGGUcgcgggagcGCCCCCCuGACc -3'
miRNA:   3'- uGCGCGaGGGGaCCCA---------CGGGGGG-CUG- -5'
21690 5' -66.5 NC_004812.1 + 78820 0.75 0.109786
Target:  5'- gGCGCaGCgggCCCCUGaccgugcggcGGUGUCCCCCGAg -3'
miRNA:   3'- -UGCG-CGa--GGGGAC----------CCACGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 8951 0.76 0.103752
Target:  5'- gACGCGCUCCCCUcGGGagguucacgaaucgUGCgCCCaCUGGCg -3'
miRNA:   3'- -UGCGCGAGGGGA-CCC--------------ACG-GGG-GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 129636 0.66 0.467947
Target:  5'- aGCGCGCcgagUUCgCgGGGcGCCCCCUGGg -3'
miRNA:   3'- -UGCGCG----AGGgGaCCCaCGGGGGGCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.