miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 151053 0.69 0.306066
Target:  5'- gGCGCgaguccuccuccGCcCCUCUGGGgGgCCCCCGGCc -3'
miRNA:   3'- -UGCG------------CGaGGGGACCCaCgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 72279 0.7 0.251062
Target:  5'- cCGCcuGC-CCCCgcccgGGGcGCUCCCCGGCg -3'
miRNA:   3'- uGCG--CGaGGGGa----CCCaCGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 78820 0.75 0.109786
Target:  5'- gGCGCaGCgggCCCCUGaccgugcggcGGUGUCCCCCGAg -3'
miRNA:   3'- -UGCG-CGa--GGGGAC----------CCACGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 121300 0.69 0.303436
Target:  5'- -gGCGCuUCCCCgcggugaucgcgcGGGUgcuGCCCaCCCGGCu -3'
miRNA:   3'- ugCGCG-AGGGGa------------CCCA---CGGG-GGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 8951 0.76 0.103752
Target:  5'- gACGCGCUCCCCUcGGGagguucacgaaucgUGCgCCCaCUGGCg -3'
miRNA:   3'- -UGCGCGAGGGGA-CCC--------------ACG-GGG-GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 123763 0.68 0.354913
Target:  5'- uGC-CGCUggcCgCCCUGGGggccGCCCCCCGcCc -3'
miRNA:   3'- -UGcGCGA---G-GGGACCCa---CGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 126072 0.74 0.140026
Target:  5'- cCGCGCg-CCCUGcGccUGCCCCCCGGCg -3'
miRNA:   3'- uGCGCGagGGGACcC--ACGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 63034 0.68 0.353444
Target:  5'- cGCGCGCUuggcCCCCggggaggcgGGGgcgucuggcuccGCCCCCaCGGCc -3'
miRNA:   3'- -UGCGCGA----GGGGa--------CCCa-----------CGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 79680 0.68 0.346885
Target:  5'- uGCGCccGCUCCCCgacuucggggggcUgcGGGUGgCCCCCGcCg -3'
miRNA:   3'- -UGCG--CGAGGGG-------------A--CCCACgGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 151524 0.68 0.333326
Target:  5'- cCGC-CUCCCCggccGGaccccgGCCCCCCGAg -3'
miRNA:   3'- uGCGcGAGGGGa---CCca----CGGGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 144488 0.68 0.326348
Target:  5'- cGCGCGC-CCCCaac---CCCCCCGACg -3'
miRNA:   3'- -UGCGCGaGGGGacccacGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 29046 0.68 0.319478
Target:  5'- gGCGCGC-CCCCUcccccGcGCCCCCCGcCg -3'
miRNA:   3'- -UGCGCGaGGGGAcc---CaCGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 33865 0.69 0.312718
Target:  5'- uGCGCGCccucUCCCCgcccgcccgcaUGGGccgGCCCgucaCCGACa -3'
miRNA:   3'- -UGCGCG----AGGGG-----------ACCCa--CGGGg---GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 119704 0.69 0.286764
Target:  5'- gGCGCGCaccgUCCCCcucGU-CCCCCCGACc -3'
miRNA:   3'- -UGCGCG----AGGGGaccCAcGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 73110 0.7 0.268434
Target:  5'- uCGCGCaCCgCCUGGccGUcgcGCUCCCCGACg -3'
miRNA:   3'- uGCGCGaGG-GGACC--CA---CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 34050 0.7 0.256747
Target:  5'- cCGCGCUCCCCUcc--GCCCCCCcccGCg -3'
miRNA:   3'- uGCGCGAGGGGAcccaCGGGGGGc--UG- -5'
21690 5' -66.5 NC_004812.1 + 25761 0.7 0.251062
Target:  5'- cCGCGC-CCCCgccgaccccGGGcgGCgCCCCGGCg -3'
miRNA:   3'- uGCGCGaGGGGa--------CCCa-CGgGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 148361 0.71 0.224178
Target:  5'- -gGCGC-CCCCgGGGgcgGaCCCCCGGCc -3'
miRNA:   3'- ugCGCGaGGGGaCCCa--CgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 155938 0.71 0.20925
Target:  5'- gACGCGCUCCCCUcgc-GCCgCCCgGGCg -3'
miRNA:   3'- -UGCGCGAGGGGAcccaCGG-GGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 55769 0.73 0.169527
Target:  5'- uCGCGCccugCCCCUGGGcaGCCCCgCGGu -3'
miRNA:   3'- uGCGCGa---GGGGACCCa-CGGGGgGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.