miRNA display CGI


Results 61 - 80 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 33865 0.69 0.312718
Target:  5'- uGCGCGCccucUCCCCgcccgcccgcaUGGGccgGCCCgucaCCGACa -3'
miRNA:   3'- -UGCGCG----AGGGG-----------ACCCa--CGGGg---GGCUG- -5'
21690 5' -66.5 NC_004812.1 + 34342 0.68 0.319478
Target:  5'- cCGCGCcCCCCgUGGuccccgugGCCCCCCGcccGCg -3'
miRNA:   3'- uGCGCGaGGGG-ACCca------CGGGGGGC---UG- -5'
21690 5' -66.5 NC_004812.1 + 1567 0.73 0.146927
Target:  5'- cGCGCGCgagCCgCCcGGGUcCCCCCCGcACg -3'
miRNA:   3'- -UGCGCGa--GG-GGaCCCAcGGGGGGC-UG- -5'
21690 5' -66.5 NC_004812.1 + 105052 0.72 0.186276
Target:  5'- gGCGcCGCUCCggCCgcGGGcgcacacugGCCCCCCGGCg -3'
miRNA:   3'- -UGC-GCGAGG--GGa-CCCa--------CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 944 0.71 0.213636
Target:  5'- cGCGCGCUCCCggCUGuGGagGCCUaggggagCCCGGCg -3'
miRNA:   3'- -UGCGCGAGGG--GAC-CCa-CGGG-------GGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 153702 0.71 0.224178
Target:  5'- gGCGgGCUCCCCcGGGcgGUCCaCCCaGAUg -3'
miRNA:   3'- -UGCgCGAGGGGaCCCa-CGGG-GGG-CUG- -5'
21690 5' -66.5 NC_004812.1 + 35580 0.7 0.251062
Target:  5'- cGCGCGCcggCgCCgagGGGaGCgCCCCCGGCc -3'
miRNA:   3'- -UGCGCGa--GgGGa--CCCaCG-GGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 65521 0.7 0.262538
Target:  5'- -gGCGCgCCCCUGGc-GCCCCCCc-- -3'
miRNA:   3'- ugCGCGaGGGGACCcaCGGGGGGcug -5'
21690 5' -66.5 NC_004812.1 + 77559 0.69 0.280547
Target:  5'- aACGCGUccggCCgCUGGGccgcGgCCCCCGACc -3'
miRNA:   3'- -UGCGCGa---GGgGACCCa---CgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 150602 0.69 0.286764
Target:  5'- cCGCGUcCCCCUuccccucGCCCCCCGGCg -3'
miRNA:   3'- uGCGCGaGGGGAccca---CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 43245 0.66 0.425375
Target:  5'- -gGCGCUgCUCcGGGUuguaGCCCCCCa-- -3'
miRNA:   3'- ugCGCGAgGGGaCCCA----CGGGGGGcug -5'
21690 5' -66.5 NC_004812.1 + 132685 0.66 0.417139
Target:  5'- gAUGUGCUCCCCcucGGUGUaCUCCGAg -3'
miRNA:   3'- -UGCGCGAGGGGac-CCACGgGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 61076 0.68 0.333326
Target:  5'- gGCGCGacgCCCC-GGGccGCCCCgCCGGg -3'
miRNA:   3'- -UGCGCga-GGGGaCCCa-CGGGG-GGCUg -5'
21690 5' -66.5 NC_004812.1 + 151107 0.68 0.336148
Target:  5'- uGCGCGgcgcccggcguccucCUCCCgUGGGUGacccucgcCCCCCCGu- -3'
miRNA:   3'- -UGCGC---------------GAGGGgACCCAC--------GGGGGGCug -5'
21690 5' -66.5 NC_004812.1 + 63034 0.68 0.353444
Target:  5'- cGCGCGCUuggcCCCCggggaggcgGGGgcgucuggcuccGCCCCCaCGGCc -3'
miRNA:   3'- -UGCGCGA----GGGGa--------CCCa-----------CGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 123763 0.68 0.354913
Target:  5'- uGC-CGCUggcCgCCCUGGGggccGCCCCCCGcCc -3'
miRNA:   3'- -UGcGCGA---G-GGGACCCa---CGGGGGGCuG- -5'
21690 5' -66.5 NC_004812.1 + 127658 0.67 0.362324
Target:  5'- uACGCGUUgCgCUGGGgcacgacGUCCCCgGGCg -3'
miRNA:   3'- -UGCGCGAgGgGACCCa------CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 26380 0.67 0.3767
Target:  5'- cGCGUGCUCUacggcggCCUGGGcgacaGCCgCCCGGg -3'
miRNA:   3'- -UGCGCGAGG-------GGACCCa----CGGgGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 111641 0.67 0.400965
Target:  5'- cGCGgGC-CUCCUGcGcGCCCCCuCGGCg -3'
miRNA:   3'- -UGCgCGaGGGGACcCaCGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 74705 0.67 0.409003
Target:  5'- uCGCGUUCgCCCUgcGGGUGCUggCCUgGGCc -3'
miRNA:   3'- uGCGCGAG-GGGA--CCCACGG--GGGgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.