miRNA display CGI


Results 81 - 100 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 5' -66.5 NC_004812.1 + 63034 0.68 0.353444
Target:  5'- cGCGCGCUuggcCCCCggggaggcgGGGgcgucuggcuccGCCCCCaCGGCc -3'
miRNA:   3'- -UGCGCGA----GGGGa--------CCCa-----------CGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 48695 0.67 0.362324
Target:  5'- -gGCGCUCUguggCUGGGggacGCaCCCCCGAg -3'
miRNA:   3'- ugCGCGAGGg---GACCCa---CG-GGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 5320 0.67 0.369843
Target:  5'- aGCGCGUcgUCCgCCgGGGcGCCgCCCGGg -3'
miRNA:   3'- -UGCGCG--AGG-GGaCCCaCGGgGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 97909 0.67 0.39303
Target:  5'- gACGCuGUUCCCCaacGGcaaGCCCCCgGGCu -3'
miRNA:   3'- -UGCG-CGAGGGGa--CCca-CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 111641 0.67 0.400965
Target:  5'- cGCGgGC-CUCCUGcGcGCCCCCuCGGCg -3'
miRNA:   3'- -UGCgCGaGGGGACcCaCGGGGG-GCUG- -5'
21690 5' -66.5 NC_004812.1 + 151610 0.67 0.409003
Target:  5'- cCGCccccGCcCgCCCUGcGGcgcacgGCCCCCCGGCg -3'
miRNA:   3'- uGCG----CGaG-GGGAC-CCa-----CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 132685 0.66 0.417139
Target:  5'- gAUGUGCUCCCCcucGGUGUaCUCCGAg -3'
miRNA:   3'- -UGCGCGAGGGGac-CCACGgGGGGCUg -5'
21690 5' -66.5 NC_004812.1 + 83216 0.69 0.312718
Target:  5'- cCGCGCUCgggggCCUcGGUgGCCCCCgGGCg -3'
miRNA:   3'- uGCGCGAGg----GGAcCCA-CGGGGGgCUG- -5'
21690 5' -66.5 NC_004812.1 + 151170 0.69 0.306066
Target:  5'- gGCGCgaguccucuuccGCcCCUCUGGGgGgCCCCCGGCc -3'
miRNA:   3'- -UGCG------------CGaGGGGACCCaCgGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 150602 0.69 0.286764
Target:  5'- cCGCGUcCCCCUuccccucGCCCCCCGGCg -3'
miRNA:   3'- uGCGCGaGGGGAccca---CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 22276 0.66 0.432868
Target:  5'- gGCGCGCgUCUuucggagCgaGGGUGaCCCUCUGGCg -3'
miRNA:   3'- -UGCGCG-AGG-------GgaCCCAC-GGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 84099 0.66 0.442131
Target:  5'- gGCcCGgaCCCCggcGGcGgcgcGCCCCCCGACc -3'
miRNA:   3'- -UGcGCgaGGGGa--CC-Ca---CGGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 35468 0.66 0.450648
Target:  5'- uCGCGCcaCCCUUGGacccccggGCCCgCCGACc -3'
miRNA:   3'- uGCGCGa-GGGGACCca------CGGGgGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 143552 0.66 0.45408
Target:  5'- cGCGaGCUCCUgucgCUGGGggcgaccggggccgGCCCCgCGACc -3'
miRNA:   3'- -UGCgCGAGGG----GACCCa-------------CGGGGgGCUG- -5'
21690 5' -66.5 NC_004812.1 + 153280 0.66 0.459254
Target:  5'- gGCGCgGCggCCCCUcGGGccccUCCCCUGGCu -3'
miRNA:   3'- -UGCG-CGa-GGGGA-CCCac--GGGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 944 0.71 0.213636
Target:  5'- cGCGCGCUCCCggCUGuGGagGCCUaggggagCCCGGCg -3'
miRNA:   3'- -UGCGCGAGGG--GAC-CCa-CGGG-------GGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 153702 0.71 0.224178
Target:  5'- gGCGgGCUCCCCcGGGcgGUCCaCCCaGAUg -3'
miRNA:   3'- -UGCgCGAGGGGaCCCa-CGGG-GGG-CUG- -5'
21690 5' -66.5 NC_004812.1 + 25761 0.7 0.251062
Target:  5'- cCGCGC-CCCCgccgaccccGGGcgGCgCCCCGGCg -3'
miRNA:   3'- uGCGCGaGGGGa--------CCCa-CGgGGGGCUG- -5'
21690 5' -66.5 NC_004812.1 + 34050 0.7 0.256747
Target:  5'- cCGCGCUCCCCUcc--GCCCCCCcccGCg -3'
miRNA:   3'- uGCGCGAGGGGAcccaCGGGGGGc--UG- -5'
21690 5' -66.5 NC_004812.1 + 77559 0.69 0.280547
Target:  5'- aACGCGUccggCCgCUGGGccgcGgCCCCCGACc -3'
miRNA:   3'- -UGCGCGa---GGgGACCCa---CgGGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.