miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21691 5' -55.6 NC_004812.1 + 3789 0.66 0.951765
Target:  5'- aCGGCGcGCACGgcggcgaCGGCGGcCUcGgcgCCg -3'
miRNA:   3'- -GCUGCuCGUGCa------GCCGCCuGAaCa--GG- -5'
21691 5' -55.6 NC_004812.1 + 129297 0.66 0.951765
Target:  5'- aCGGCGcGCACGgcggcgaCGGCGGcCUcGgcgCCg -3'
miRNA:   3'- -GCUGCuCGUGCa------GCCGCCuGAaCa--GG- -5'
21691 5' -55.6 NC_004812.1 + 64154 0.66 0.951765
Target:  5'- gGACG-GCgGCG-CGGCGGGC---UCCg -3'
miRNA:   3'- gCUGCuCG-UGCaGCCGCCUGaacAGG- -5'
21691 5' -55.6 NC_004812.1 + 55606 0.66 0.951765
Target:  5'- -aGCGAGCGC-UUGGUGaGGCg-GUCCg -3'
miRNA:   3'- gcUGCUCGUGcAGCCGC-CUGaaCAGG- -5'
21691 5' -55.6 NC_004812.1 + 59196 0.66 0.951765
Target:  5'- gGGCaGGGCcCGcCGGCGuGCggGUCCa -3'
miRNA:   3'- gCUG-CUCGuGCaGCCGCcUGaaCAGG- -5'
21691 5' -55.6 NC_004812.1 + 86547 0.66 0.950961
Target:  5'- uGACGAGCACagauuccgacgCGGCGGucgucgccUUUGUCa -3'
miRNA:   3'- gCUGCUCGUGca---------GCCGCCu-------GAACAGg -5'
21691 5' -55.6 NC_004812.1 + 68547 0.66 0.950961
Target:  5'- aGGCGAGCuACGUCucgcgagacgacGCGGACggGaCCg -3'
miRNA:   3'- gCUGCUCG-UGCAGc-----------CGCCUGaaCaGG- -5'
21691 5' -55.6 NC_004812.1 + 73346 0.66 0.950148
Target:  5'- gCGGCGAGCgGCGcccCGGCcGACgccucgcccccggUGUCCc -3'
miRNA:   3'- -GCUGCUCG-UGCa--GCCGcCUGa------------ACAGG- -5'
21691 5' -55.6 NC_004812.1 + 130654 0.66 0.947655
Target:  5'- gGACG-GCgGCGUCGGCccgcgguccGGGCccgaGUCCu -3'
miRNA:   3'- gCUGCuCG-UGCAGCCG---------CCUGaa--CAGG- -5'
21691 5' -55.6 NC_004812.1 + 14545 0.66 0.947655
Target:  5'- -cGCGAcCGCGggGGCGGGCUcGUCg -3'
miRNA:   3'- gcUGCUcGUGCagCCGCCUGAaCAGg -5'
21691 5' -55.6 NC_004812.1 + 27233 0.66 0.947655
Target:  5'- uGACcAGgAUGUUGGCGcACUugaUGUCCa -3'
miRNA:   3'- gCUGcUCgUGCAGCCGCcUGA---ACAGG- -5'
21691 5' -55.6 NC_004812.1 + 94686 0.66 0.947655
Target:  5'- -cGCGGGUGCGUgGGUgGGGCgagGUCUu -3'
miRNA:   3'- gcUGCUCGUGCAgCCG-CCUGaa-CAGG- -5'
21691 5' -55.6 NC_004812.1 + 109001 0.66 0.947655
Target:  5'- --cCGAGCcCGUCGGCGcGCUcgggGUCg -3'
miRNA:   3'- gcuGCUCGuGCAGCCGCcUGAa---CAGg -5'
21691 5' -55.6 NC_004812.1 + 79437 0.66 0.947655
Target:  5'- gCGGCGGGgACGgcgccgccgCgGGCGGGCUg--CCg -3'
miRNA:   3'- -GCUGCUCgUGCa--------G-CCGCCUGAacaGG- -5'
21691 5' -55.6 NC_004812.1 + 5145 0.66 0.947655
Target:  5'- gGACG-GCgGCGUCGGCccgcgguccGGGCccgaGUCCu -3'
miRNA:   3'- gCUGCuCG-UGCAGCCG---------CCUGaa--CAGG- -5'
21691 5' -55.6 NC_004812.1 + 51532 0.66 0.947655
Target:  5'- gGACGAGCGCc-CGGCaGACcccaggccGUCCc -3'
miRNA:   3'- gCUGCUCGUGcaGCCGcCUGaa------CAGG- -5'
21691 5' -55.6 NC_004812.1 + 20280 0.66 0.947655
Target:  5'- gGACGAGguCGggGGUGGGCggcgcgCCg -3'
miRNA:   3'- gCUGCUCguGCagCCGCCUGaaca--GG- -5'
21691 5' -55.6 NC_004812.1 + 99874 0.66 0.947655
Target:  5'- uCGugGAGUccauGgGUCuGGCGaGGCccUGUCCg -3'
miRNA:   3'- -GCugCUCG----UgCAG-CCGC-CUGa-ACAGG- -5'
21691 5' -55.6 NC_004812.1 + 2978 0.66 0.947655
Target:  5'- gCGcCGAG-ACGUCgGGCGG-CcgGUCCa -3'
miRNA:   3'- -GCuGCUCgUGCAG-CCGCCuGaaCAGG- -5'
21691 5' -55.6 NC_004812.1 + 17594 0.66 0.945081
Target:  5'- cCGGCu-GgGCGUCGGaGGACUuccgcgccggccucgUGUCCu -3'
miRNA:   3'- -GCUGcuCgUGCAGCCgCCUGA---------------ACAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.