miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21693 3' -54.1 NC_004812.1 + 37107 0.66 0.961127
Target:  5'- cGCCGUCGAGG-CG-GUGUugGCGcccGCGUc -3'
miRNA:   3'- -CGGUAGUUCCuGCaCACG--CGC---UGCAu -5'
21693 3' -54.1 NC_004812.1 + 98887 0.66 0.961127
Target:  5'- cGUCAUCGucggaaagaGGGGCGcgGUgGCGCGGCa-- -3'
miRNA:   3'- -CGGUAGU---------UCCUGCa-CA-CGCGCUGcau -5'
21693 3' -54.1 NC_004812.1 + 128301 0.66 0.961127
Target:  5'- gGCgCAgggCAGGuaGACGUGgcggcGCGCGACGg- -3'
miRNA:   3'- -CG-GUa--GUUC--CUGCACa----CGCGCUGCau -5'
21693 3' -54.1 NC_004812.1 + 123211 0.66 0.961127
Target:  5'- gGCCGUCGcGuuCGUGUGCGUcACGa- -3'
miRNA:   3'- -CGGUAGUuCcuGCACACGCGcUGCau -5'
21693 3' -54.1 NC_004812.1 + 53238 0.66 0.961127
Target:  5'- cGCCAggaccuguUCGAGGGCcUGUGuUGCGACc-- -3'
miRNA:   3'- -CGGU--------AGUUCCUGcACAC-GCGCUGcau -5'
21693 3' -54.1 NC_004812.1 + 2793 0.66 0.961127
Target:  5'- gGCgCAgggCAGGuaGACGUGgcggcGCGCGACGg- -3'
miRNA:   3'- -CG-GUa--GUUC--CUGCACa----CGCGCUGCau -5'
21693 3' -54.1 NC_004812.1 + 153452 0.66 0.961127
Target:  5'- cGCCGacccCGAGGACGUGcGCGUGcUGg- -3'
miRNA:   3'- -CGGUa---GUUCCUGCACaCGCGCuGCau -5'
21693 3' -54.1 NC_004812.1 + 18098 0.66 0.961127
Target:  5'- aGCCGUCGuGGuACGUGUGggaguaGCGGCc-- -3'
miRNA:   3'- -CGGUAGUuCC-UGCACACg-----CGCUGcau -5'
21693 3' -54.1 NC_004812.1 + 110038 0.66 0.961127
Target:  5'- --aGUCcccGGGCG-GUGCGCGGCGa- -3'
miRNA:   3'- cggUAGuu-CCUGCaCACGCGCUGCau -5'
21693 3' -54.1 NC_004812.1 + 29901 0.66 0.95746
Target:  5'- gGCCGggccGGGCGUGgugGCGgCGGCGa- -3'
miRNA:   3'- -CGGUaguuCCUGCACa--CGC-GCUGCau -5'
21693 3' -54.1 NC_004812.1 + 98703 0.66 0.95746
Target:  5'- cGCCGcgcCGGGGGCGgcgGCGCGGgGUc -3'
miRNA:   3'- -CGGUa--GUUCCUGCacaCGCGCUgCAu -5'
21693 3' -54.1 NC_004812.1 + 133053 0.66 0.95746
Target:  5'- cGCCcacUCGGGGGCGg--GCGCGGgGg- -3'
miRNA:   3'- -CGGu--AGUUCCUGCacaCGCGCUgCau -5'
21693 3' -54.1 NC_004812.1 + 155409 0.66 0.95746
Target:  5'- gGCCGggccGGGCGUGgugGCGgCGGCGa- -3'
miRNA:   3'- -CGGUaguuCCUGCACa--CGC-GCUGCau -5'
21693 3' -54.1 NC_004812.1 + 7545 0.66 0.95746
Target:  5'- cGCCcacUCGGGGGCGg--GCGCGGgGg- -3'
miRNA:   3'- -CGGu--AGUUCCUGCacaCGCGCUgCau -5'
21693 3' -54.1 NC_004812.1 + 14108 0.66 0.95746
Target:  5'- gGCgAUCcGGGGCGU--GCGUGGCGg- -3'
miRNA:   3'- -CGgUAGuUCCUGCAcaCGCGCUGCau -5'
21693 3' -54.1 NC_004812.1 + 112089 0.66 0.95746
Target:  5'- gGCCGUCGuGGugGUGgugGCGUuuCGg- -3'
miRNA:   3'- -CGGUAGUuCCugCACa--CGCGcuGCau -5'
21693 3' -54.1 NC_004812.1 + 2863 0.66 0.953563
Target:  5'- cGCCG---AGGACGccGUGCGCGcCGg- -3'
miRNA:   3'- -CGGUaguUCCUGCa-CACGCGCuGCau -5'
21693 3' -54.1 NC_004812.1 + 33764 0.66 0.953563
Target:  5'- cGCCG---AGGACGccGUGCGCGcCGg- -3'
miRNA:   3'- -CGGUaguUCCUGCa-CACGCGCuGCau -5'
21693 3' -54.1 NC_004812.1 + 101051 0.66 0.951113
Target:  5'- gGCCAgCAGGGccccgguggccacguACGUGagGCGCGccGCGUGg -3'
miRNA:   3'- -CGGUaGUUCC---------------UGCACa-CGCGC--UGCAU- -5'
21693 3' -54.1 NC_004812.1 + 53847 0.66 0.949433
Target:  5'- aGCgGUCcgcggcguAGGcCGUGUGCuCGGCGUGg -3'
miRNA:   3'- -CGgUAGu-------UCCuGCACACGcGCUGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.